Os01g0776500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os01g0776500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 376.3 | 0.911 | 4.48 | 1.76 | 0.867 | -1.97 | -0.251 | 11 | -0.098 | 17.4 | 31.6 | 5633 | -- | -- |
| 389.48 | 0.919 | 4.69 | -0.396 | 0.892 | -0.763 | -0.571 | -- | -0.0361 | 17.7 | 31.7 | 6975 | -- | -- |
| 376.43 | 0.904 | 4.48 | 1.78 | 0.864 | -1.99 | -- | 11.2 | -0.101 | 17.4 | 31.6 | 5622 | -- | -- |
| 389.76 | 0.919 | 4.7 | -0.444 | 0.923 | -0.765 | -- | -- | -0.0446 | 17.7 | 31.7 | 6875 | -- | -- |
| 414.95 | 0.949 | 4.47 | 1.85 | -- | -2.11 | -- | 11.5 | -0.121 | -- | 31.6 | 5632 | -- | -- |
| 421.57 | 0.963 | 4.72 | -0.7 | 0.983 | -- | -0.44 | -- | -0.0907 | 17.5 | -- | -- | -- | -- |
| 422.04 | 0.962 | 4.72 | -0.698 | 0.981 | -- | -- | -- | -0.0925 | 17.5 | -- | -- | -- | -- |
| 432.47 | 0.969 | 4.69 | -0.469 | -- | -0.839 | -- | -- | -0.0427 | -- | 31.58 | 7003 | -- | -- |
| 395.38 | 0.926 | 4.69 | -- | 0.9 | -0.821 | -- | -- | 0.00089 | 17.7 | 31.64 | 6874 | -- | -- |
| 472.06 | 1.02 | 4.71 | -0.73 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 434.87 | 0.975 | 4.7 | -- | 0.992 | -- | -- | -- | -0.0148 | 17.4 | -- | -- | -- | -- |
| 437.92 | 0.975 | 4.68 | -- | -- | -0.908 | -- | -- | 0.00324 | -- | 31.79 | 6994 | -- | -- |
| 486.13 | 1.03 | 4.69 | -- | -- | -- | -- | -- | -0.0354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 382.13 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 16 | 382.18 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 47 | 384.95 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 48 | 385.03 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 49 | 385.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 77 | 387.07 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 85 | 388.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 107 | 388.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 120 | 389.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 123 | 389.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 124 | 389.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 146 | 389.22 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 167 | 389.34 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 170 | 389.38 | temperature | 30 | 4320 | > th | dose dependent | sin | 15 | NA |
| 176 | 389.43 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 6 |
| 212 | 389.57 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 320 | 389.75 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 418 | 389.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 426 | 389.88 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 20 |
| 429 | 389.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 434 | 390.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 11 |
| 448 | 390.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 450 | 390.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 467 | 390.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 498 | 390.46 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 505 | 390.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 509 | 390.54 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 513 | 390.56 | temperature | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 516 | 390.56 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 517 | 390.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 525 | 390.66 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 528 | 390.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 531 | 390.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 551 | 390.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 561 | 390.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 565 | 390.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 568 | 390.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 570 | 390.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 582 | 390.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 586 | 390.87 | temperature | 30 | 4320 | > th | dose independent | sin | 11 | NA |
| 592 | 390.89 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 10 |
| 596 | 390.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 600 | 390.94 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 601 | 390.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 608 | 390.99 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 610 | 391.01 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 611 | 391.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 619 | 391.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 624 | 391.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 629 | 391.07 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 643 | 391.14 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 647 | 391.14 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 678 | 391.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 686 | 391.29 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 687 | 391.29 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 694 | 391.31 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 711 | 391.36 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 744 | 391.43 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 750 | 391.45 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 770 | 391.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 780 | 391.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 934 | 391.87 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 958 | 391.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 969 | 391.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 970 | 391.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |