Os01g0775200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF593 family protein.
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Os01g0775200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF593 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.49 | 0.255 | 9.63 | 0.382 | 1.49 | 0.497 | -0.0953 | 0.0796 | 0.218 | 3.78 | 19.2 | 319 | -- | -- |
| 29.51 | 0.253 | 9.64 | 0.37 | 1.49 | 0.497 | -0.116 | -- | 0.219 | 3.77 | 19.15 | 320 | -- | -- |
| 29.51 | 0.253 | 9.63 | 0.386 | 1.49 | 0.519 | -- | 0.142 | 0.222 | 3.77 | 19.19 | 319 | -- | -- |
| 29.54 | 0.253 | 9.64 | 0.379 | 1.49 | 0.479 | -- | -- | 0.218 | 3.77 | 19.3 | 319 | -- | -- |
| 140.33 | 0.552 | 9.65 | 0.292 | -- | 0.713 | -- | -0.0872 | 0.209 | -- | 18.31 | 1026 | -- | -- |
| 34.22 | 0.274 | 9.62 | 0.535 | 1.44 | -- | -0.0202 | -- | 0.287 | 3.76 | -- | -- | -- | -- |
| 34.22 | 0.274 | 9.62 | 0.535 | 1.44 | -- | -- | -- | 0.287 | 3.76 | -- | -- | -- | -- |
| 139.75 | 0.551 | 9.64 | 0.39 | -- | 0.954 | -- | -- | 0.245 | -- | 17.9 | 1050 | -- | -- |
| 32.77 | 0.267 | 9.65 | -- | 1.5 | 0.638 | -- | -- | 0.161 | 3.76 | 19.2 | 320 | -- | -- |
| 148.32 | 0.569 | 9.62 | 0.595 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 41.77 | 0.302 | 9.63 | -- | 1.45 | -- | -- | -- | 0.227 | 3.76 | -- | -- | -- | -- |
| 142.46 | 0.556 | 9.66 | -- | -- | 1.07 | -- | -- | 0.172 | -- | 18.32 | 1080 | -- | -- |
| 157.66 | 0.586 | 9.64 | -- | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.05 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 4 | 25.24 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 14 | 26.12 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 21 |
| 15 | 26.13 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 19 |
| 31 | 26.71 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 32 | 26.76 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 46 | 27.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 56 | 27.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 116 | 28.04 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 153 | 28.31 | temperature | 20 | 270 | < th | dose dependent | sin | 11 | NA |
| 157 | 28.32 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 163 | 28.34 | temperature | 20 | 270 | < th | dose dependent | rect. | 20 | 12 |
| 172 | 28.39 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 208 | 28.57 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 14 |
| 230 | 28.65 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 9 |
| 235 | 28.66 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 258 | 28.72 | temperature | 20 | 10 | < th | dose dependent | rect. | 21 | 13 |
| 269 | 28.74 | temperature | 20 | 10 | < th | dose dependent | sin | 9 | NA |
| 289 | 28.77 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 305 | 28.79 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 321 | 28.81 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 327 | 28.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 330 | 28.82 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 19 | 10 |
| 341 | 28.83 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 16 |
| 355 | 28.86 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 13 |
| 363 | 28.87 | temperature | 20 | 10 | < th | dose dependent | rect. | 21 | 9 |
| 370 | 28.87 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 372 | 28.88 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 393 | 28.90 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 414 | 28.93 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 430 | 28.94 | humidity | 50 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 447 | 28.96 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 508 | 29.03 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 10 |
| 562 | 29.08 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 625 | 29.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 632 | 29.15 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 634 | 29.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 669 | 29.18 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 702 | 29.19 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 754 | 29.24 | temperature | 20 | 720 | < th | dose independent | sin | 17 | NA |
| 782 | 29.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 797 | 29.27 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 14 |
| 802 | 29.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 803 | 29.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 894 | 29.33 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 929 | 29.35 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 937 | 29.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 955 | 29.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 19 |