Os01g0773500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0773500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.49 | 0.522 | 3.19 | -0.223 | 0.511 | 0.366 | -0.194 | -0.812 | 0.354 | 23.7 | 22.66 | 26 | -- | -- |
| 125.23 | 0.521 | 3.19 | -0.228 | 0.52 | 0.358 | 0.319 | -- | 0.359 | 23.6 | 22.67 | 26 | -- | -- |
| 123.61 | 0.518 | 3.19 | -0.217 | 0.508 | 0.364 | -- | -0.698 | 0.356 | 23.6 | 22.86 | 25 | -- | -- |
| 125.61 | 0.522 | 3.19 | -0.238 | 0.514 | 0.361 | -- | -- | 0.356 | 23.6 | 22.67 | 26 | -- | -- |
| 133.22 | 0.541 | 3.18 | -0.177 | -- | 0.0563 | -- | -0.699 | 0.38 | -- | 26.61 | 31 | -- | -- |
| 129.88 | 0.534 | 3.18 | -0.205 | 0.294 | -- | 0.265 | -- | 0.376 | 22.9 | -- | -- | -- | -- |
| 130.18 | 0.534 | 3.18 | -0.216 | 0.293 | -- | -- | -- | 0.375 | 22.9 | -- | -- | -- | -- |
| 135.2 | 0.542 | 3.18 | -0.188 | -- | 0.0807 | -- | -- | 0.364 | -- | 30 | 31 | -- | -- |
| 127.11 | 0.525 | 3.19 | -- | 0.497 | 0.344 | -- | -- | 0.375 | 23.5 | 23.18 | 30 | -- | -- |
| 135.5 | 0.544 | 3.18 | -0.21 | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
| 131.41 | 0.536 | 3.18 | -- | 0.291 | -- | -- | -- | 0.4 | 22.9 | -- | -- | -- | -- |
| 136.33 | 0.544 | 3.17 | -- | -- | 0.0832 | -- | -- | 0.398 | -- | 29.99 | 31 | -- | -- |
| 136.66 | 0.546 | 3.17 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.45 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 15 |
| 2 | 110.49 | humidity | 70 | 90 | < th | dose independent | rect. | 6 | 3 |
| 13 | 110.52 | humidity | 80 | 90 | < th | dose dependent | rect. | 22 | 11 |
| 16 | 110.79 | humidity | 80 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 19 | 110.80 | radiation | 40 | 10 | < th | dose independent | sin | 12 | NA |
| 24 | 110.89 | humidity | 70 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 28 | 111.04 | radiation | 30 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 32 | 111.24 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 17 |
| 34 | 111.33 | humidity | 70 | 10 | < th | dose independent | rect. | 16 | 17 |
| 35 | 111.35 | humidity | 70 | 10 | < th | dose independent | sin | 11 | NA |
| 44 | 111.62 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 14 |
| 67 | 111.87 | radiation | 30 | 10 | > th | dose independent | rect. | 7 | 1 |
| 97 | 111.95 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 113 | 111.95 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 199 | 112.02 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 273 | 112.02 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 547 | 113.01 | humidity | 80 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 550 | 113.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 558 | 113.11 | radiation | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 565 | 113.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 566 | 113.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 568 | 113.29 | radiation | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 571 | 113.32 | humidity | 70 | 10 | > th | dose independent | sin | 11 | NA |
| 576 | 113.41 | humidity | 80 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 580 | 113.45 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 582 | 113.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 592 | 113.63 | radiation | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 859 | 114.12 | humidity | 80 | 10 | < th | dose dependent | sin | 10 | NA |