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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0773000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA pseudouridine synthase D, TruD family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0342) R2 : 0.655
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.51 (0.0906) R2dC : 0.62 R2C : 0.44
β3 : -1.2 (0.0772) R2dE : 0.196 R2E : 0.0208
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.19 (0.0732) R2dN8 : 0.00742 R2N8 : 0.0167
σ : 0.64
deviance : 188.62
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_____
C
peak time of C : 19.7
E
wheather : temperature
threshold : 20.1
memory length : 285
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.5
open length of G : 18.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.8 0.639 6.07 0.421 2.44 -1.24 0.057 0.113 -0.154 19.9 19.97 273 14 18
184.59 0.633 6.07 0.425 2.47 -1.24 0.165 -- -0.157 19.8 20 276 13.8 18.1
184.64 0.633 6.06 0.438 2.46 -1.25 -- 0.134 -0.15 19.9 19.9 276 13.9 17.9
184.31 0.632 6.07 0.419 2.49 -1.28 -- -- -0.154 19.8 20 292 13.5 18.2
226.78 0.701 6.03 0.549 -- -2.11 -- 0.503 -0.15 -- 14.23 897 14 18.4
245.34 0.734 6.11 0.0894 2.34 -- -0.336 -- -0.405 18.4 -- -- -- --
245.62 0.734 6.11 0.0939 2.34 -- -- -- -0.406 18.4 -- -- -- --
217.68 0.687 6.04 0.146 -- -2.33 -- -- -0.332 -- 14.3 928 13.8 18.2
188.62 0.64 6.07 -- 2.51 -1.2 -- -- -0.19 19.7 20.1 285 13.5 18.2
529.96 1.08 6.07 0.0338 -- -- -- -- -0.455 -- -- -- -- --
245.85 0.733 6.11 -- 2.34 -- -- -- -0.416 18.4 -- -- -- --
218.25 0.688 6.04 -- -- -2.3 -- -- -0.342 -- 14.3 927 13.8 18.1
529.99 1.07 6.07 -- -- -- -- -- -0.459 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.27 temperature 20 270 > th dose independent rect. 14 18
30 194.06 temperature 20 270 > th dose independent rect. 2 18
35 194.21 temperature 20 270 > th dose independent rect. 1 21
36 194.39 temperature 20 270 > th dose independent rect. 1 7
40 194.62 temperature 15 270 > th dose dependent rect. 1 7
41 194.63 temperature 10 270 > th dose dependent rect. 15 16
48 195.27 temperature 20 270 > th dose dependent rect. 2 5
52 195.64 temperature 10 720 > th dose dependent rect. 19 7
67 196.84 temperature 20 270 > th dose independent rect. 3 4
75 197.03 temperature 30 270 < th dose dependent rect. 20 7
92 197.94 temperature 25 10 < th dose dependent sin 8 NA
111 198.65 temperature 25 720 < th dose dependent rect. 15 12
136 199.28 temperature 25 720 < th dose dependent sin 15 NA
155 199.65 temperature 25 10 < th dose dependent rect. 22 13
173 200.08 temperature 10 10 > th dose dependent sin 9 NA
180 200.22 temperature 25 90 < th dose dependent rect. 22 13
207 200.60 temperature 30 10 < th dose dependent rect. 20 10
220 200.83 temperature 25 10 < th dose dependent rect. 22 16
261 201.46 temperature 30 10 < th dose dependent rect. 22 8
280 201.72 temperature 20 10 > th dose dependent rect. 19 14
329 202.41 temperature 20 10 > th dose dependent rect. 1 8
331 202.42 temperature 20 10 > th dose dependent rect. 22 11
351 202.88 temperature 25 10 < th dose dependent rect. 20 16
395 203.16 temperature 15 10 > th dose dependent rect. 15 18
419 203.47 temperature 25 10 < th dose dependent rect. 20 18
587 204.94 temperature 10 720 > th dose dependent sin 14 NA
639 205.37 temperature 20 270 < th dose independent rect. 5 23
706 205.87 temperature 30 10 < th dose dependent rect. 18 12
751 206.10 temperature 20 270 < th dose independent rect. 19 22
847 206.73 humidity 50 14400 > th dose independent rect. 5 4
848 206.73 temperature 20 30 > th dose independent rect. 15 23
874 206.87 temperature 20 270 < th dose independent rect. 11 23
878 206.89 temperature 20 270 > th dose independent no NA NA
889 206.96 temperature 20 270 < th dose independent no NA NA