Os01g0772600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Casein kinase-like protein.
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Os01g0772600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Casein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.48 | 0.159 | 12.7 | 0.0682 | 0.154 | -0.372 | 0.0266 | 0.221 | 0.171 | 10.2 | 20.37 | 11795 | -- | -- |
| 11.45 | 0.158 | 12.7 | 0.0622 | 0.156 | -0.455 | 0.0357 | -- | 0.165 | 10.2 | 19.7 | 11796 | -- | -- |
| 11.48 | 0.158 | 12.7 | 0.0677 | 0.155 | -0.374 | -- | 0.214 | 0.17 | 10.1 | 20.3 | 11790 | -- | -- |
| 11.45 | 0.158 | 12.7 | 0.0679 | 0.153 | -0.457 | -- | -- | 0.165 | 10.1 | 19.7 | 11805 | -- | -- |
| 12.91 | 0.167 | 12.7 | 0.0692 | -- | -0.382 | -- | 0.2 | 0.172 | -- | 20.2 | 11872 | -- | -- |
| 14.32 | 0.177 | 12.8 | -0.295 | 0.157 | -- | 0.0548 | -- | 0.0206 | 10.3 | -- | -- | -- | -- |
| 14.33 | 0.177 | 12.8 | -0.293 | 0.157 | -- | -- | -- | 0.0207 | 10.3 | -- | -- | -- | -- |
| 12.87 | 0.167 | 12.8 | 0.0777 | -- | -0.465 | -- | -- | 0.164 | -- | 19.65 | 11967 | -- | -- |
| 11.56 | 0.158 | 12.7 | -- | 0.15 | -0.444 | -- | -- | 0.16 | 10.2 | 19.7 | 11758 | -- | -- |
| 15.82 | 0.186 | 12.8 | -0.295 | -- | -- | -- | -- | 0.0203 | -- | -- | -- | -- | -- |
| 16.58 | 0.19 | 12.8 | -- | 0.158 | -- | -- | -- | 0.0532 | 10.4 | -- | -- | -- | -- |
| 12.94 | 0.168 | 12.8 | -- | -- | -0.408 | -- | -- | 0.144 | -- | 19.8 | 11898 | -- | -- |
| 18.12 | 0.199 | 12.8 | -- | -- | -- | -- | -- | 0.053 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 3 | 10.85 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 11 | 11.01 | temperature | 15.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 15 | 11.06 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 16 | 11.06 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 26 | 11.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 28 | 11.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 66 | 11.22 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 71 | 11.23 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 79 | 11.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 97 | 11.28 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 98 | 11.28 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 104 | 11.29 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 123 | 11.31 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 129 | 11.32 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 130 | 11.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 142 | 11.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 148 | 11.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 155 | 11.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 209 | 11.34 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 216 | 11.34 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 232 | 11.34 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 276 | 11.36 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 296 | 11.37 | radiation | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 339 | 11.38 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 341 | 11.38 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 372 | 11.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 379 | 11.39 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 380 | 11.39 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 485 | 11.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 497 | 11.41 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 503 | 11.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 546 | 11.42 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 551 | 11.42 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 573 | 11.42 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 607 | 11.42 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 610 | 11.42 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 3 | 19 |
| 615 | 11.42 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 622 | 11.42 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 20 |
| 643 | 11.43 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 661 | 11.43 | temperature | 25.0 | 14400 | < th | dose dependent | no | NA | NA |
| 720 | 11.43 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 730 | 11.43 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 790 | 11.43 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 819 | 11.44 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 858 | 11.44 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 933 | 11.44 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 936 | 11.44 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 15 |
| 944 | 11.44 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 979 | 11.44 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 1 | 17 |