FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0770800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ctr copper transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0164) R2 : 0.00081
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0209 (0.0345) R2dN8 : 0.00105 R2N8 : 0.00081
σ : 0.308
deviance : 43.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.94 0.293 3.24 0.205 0.191 -0.254 -0.077 -0.996 -0.0501 7.53 42.04 5914 -- --
40.17 0.295 3.24 0.147 0.211 -0.269 -0.0926 -- -0.0729 7.76 15.98 8043 -- --
38.95 0.291 3.24 0.203 0.191 -0.253 -- -1 -0.0496 7.64 33.71 5914 -- --
40.18 0.295 3.24 0.143 0.211 -0.278 -- -- -0.0766 7.86 10.23 8086 -- --
40.88 0.298 3.25 0.203 -- -0.258 -- -0.967 -0.0497 -- 32.25 5839 -- --
41.39 0.302 3.23 0.105 0.188 -- -0.0946 -- -0.0123 7.49 -- -- -- --
41.41 0.301 3.23 0.103 0.188 -- -- -- -0.012 7.63 -- -- -- --
42.14 0.302 3.24 0.142 -- -0.287 -- -- -0.0703 -- 31.29 7152 -- --
40.69 0.297 3.24 -- 0.208 -0.245 -- -- -0.0858 7.8 3.357 8086 -- --
43.31 0.307 3.23 0.106 -- -- -- -- -0.00919 -- -- -- -- --
41.69 0.302 3.23 -- 0.189 -- -- -- -0.0235 7.59 -- -- -- --
42.65 0.304 3.25 -- -- -0.264 -- -- -0.0805 -- 14.94 5739 -- --
43.6 0.308 3.23 -- -- -- -- -- -0.0209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.64 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 34.30 atmosphere 1005.0 90 > th dose dependent rect. 2 1
6 34.68 atmosphere 1005.0 10 > th dose dependent rect. 2 2
8 34.90 temperature 25.0 90 > th dose independent rect. 1 1
11 35.06 temperature 25.0 90 > th dose dependent rect. 1 2
12 35.16 radiation 1.0 43200 < th dose dependent rect. 3 1
13 35.18 atmosphere 1010.0 30 < th dose dependent rect. 2 1
15 35.20 radiation 1.0 4320 < th dose dependent rect. 3 1
19 35.26 wind 3.0 30 < th dose independent rect. 2 1
23 35.27 wind 5.0 30 < th dose dependent rect. 2 1
26 35.27 temperature 10.0 30 > th dose dependent rect. 2 1
33 35.28 temperature 10.0 30 > th dose independent rect. 2 1
36 35.28 temperature 30.0 30 < th dose independent rect. 2 1
37 35.28 humidity 50.0 30 > th dose independent rect. 2 1
40 35.28 humidity 90.0 30 > th dose independent rect. 2 1
41 35.28 atmosphere 995.0 30 > th dose independent rect. 2 1
42 35.28 atmosphere 1010.0 30 < th dose independent rect. 2 1
44 35.28 radiation 1.0 30 < th dose independent rect. 2 1
49 35.28 precipitation 0.1 30 < th dose independent rect. 2 1
50 35.28 temperature 10.0 30 > th dose independent rect. 3 23
52 35.28 humidity 50.0 30 > th dose dependent rect. 2 1
57 35.28 radiation 1.0 30 < th dose dependent rect. 2 1
65 35.28 precipitation 0.1 30 < th dose dependent rect. 2 1
66 35.29 wind 9.0 1440 < th dose independent rect. 3 1
67 35.29 temperature 10.0 1440 > th dose independent rect. 3 1
70 35.29 temperature 30.0 1440 < th dose independent rect. 3 1
74 35.29 humidity 50.0 1440 > th dose independent rect. 3 1
83 35.29 atmosphere 995.0 1440 > th dose independent rect. 3 1
84 35.29 radiation 1.0 1440 < th dose independent rect. 3 1
104 35.29 temperature 10.0 1440 > th dose independent rect. 4 23
126 35.33 wind 1.0 30 > th dose independent rect. 2 1
127 35.33 temperature 30.0 30 < th dose dependent rect. 2 1
164 35.43 precipitation 0.1 30 < th dose independent rect. 3 23
173 35.43 precipitation 0.1 30 < th dose dependent rect. 3 23
185 35.69 wind 9.0 30 < th dose independent rect. 3 23
207 36.49 humidity 50.0 30 > th dose independent rect. 3 23
237 36.79 humidity 90.0 90 < th dose independent rect. 2 1
276 37.80 atmosphere 995.0 720 > th dose independent rect. 23 16
278 37.85 humidity 90.0 90 < th dose independent rect. 1 3
281 37.89 temperature 30.0 30 < th dose independent rect. 3 23
299 38.08 humidity 80.0 14400 < th dose dependent rect. 2 7
333 38.15 humidity 80.0 14400 < th dose dependent rect. 21 13
343 38.22 atmosphere 995.0 720 > th dose independent rect. 7 8
352 38.28 atmosphere 1015.0 30 < th dose independent rect. 3 23
360 38.37 atmosphere 995.0 30 > th dose dependent rect. 3 23
373 38.43 atmosphere 1000.0 10 > th dose independent rect. 16 10
385 38.47 temperature 25.0 270 > th dose independent rect. 23 4
398 38.51 wind 9.0 30 < th dose dependent rect. 3 23
402 38.54 wind 1.0 30 < th dose independent rect. 21 6
405 38.54 precipitation 0.1 720 < th dose independent rect. 15 8
407 38.54 humidity 70.0 14400 > th dose independent rect. 20 14
408 38.54 precipitation 0.1 720 < th dose dependent rect. 15 8
425 38.55 humidity 70.0 14400 > th dose independent rect. 4 6
426 38.55 humidity 70.0 14400 > th dose independent rect. 22 12
434 38.55 radiation 20.0 30 < th dose dependent rect. 3 23
435 38.56 humidity 70.0 14400 > th dose independent rect. 7 3
443 38.56 atmosphere 1000.0 10 > th dose independent rect. 14 12
446 38.57 humidity 70.0 14400 < th dose independent rect. 8 2
448 38.57 wind 1.0 10 < th dose independent rect. 13 14
460 38.58 humidity 70.0 14400 < th dose independent rect. 20 14
473 38.59 atmosphere 1000.0 720 > th dose independent rect. 3 8
514 38.69 wind 3.0 14400 > th dose independent rect. 10 2
515 38.69 temperature 10.0 720 > th dose independent rect. 15 8
516 38.69 temperature 10.0 720 > th dose independent rect. 23 16
522 38.71 radiation 10.0 30 < th dose independent rect. 3 23
535 38.74 precipitation 0.1 720 < th dose independent rect. 11 16
536 38.74 wind 5.0 14400 < th dose dependent rect. 11 1
539 38.74 precipitation 0.1 720 < th dose dependent rect. 11 16
543 38.76 wind 3.0 14400 > th dose independent rect. 19 1
551 38.78 wind 3.0 14400 < th dose independent rect. 10 2
566 38.78 temperature 10.0 720 > th dose independent rect. 3 8
568 38.78 temperature 10.0 720 > th dose independent rect. 11 16
570 38.78 wind 1.0 10 < th dose independent rect. 6 21
588 38.81 wind 9.0 720 < th dose independent rect. 19 8
594 38.83 humidity 70.0 4320 > th dose dependent rect. 3 8
596 38.84 wind 1.0 10 < th dose independent rect. 8 19
601 38.85 humidity 90.0 10 > th dose independent rect. 24 3
608 38.86 humidity 50.0 30 > th dose dependent rect. 3 23
610 38.87 wind 3.0 14400 < th dose independent rect. 19 1
620 38.88 precipitation 0.1 720 < th dose independent rect. 15 16
623 38.88 precipitation 0.1 720 < th dose dependent rect. 15 16
639 38.91 wind 9.0 720 < th dose independent rect. 3 8
644 38.92 humidity 80.0 14400 < th dose dependent sin 8 NA
645 38.92 humidity 80.0 4320 > th dose dependent rect. 6 3
649 38.93 atmosphere 995.0 720 > th dose independent rect. 3 23
651 38.94 humidity 90.0 720 < th dose independent rect. 1 3
655 38.94 wind 1.0 14400 < th dose dependent rect. 6 1
662 38.95 temperature 10.0 720 > th dose independent rect. 7 8
663 38.95 atmosphere 1015.0 720 < th dose independent rect. 7 8
664 38.95 temperature 10.0 720 > th dose independent rect. 15 16
683 38.98 precipitation 0.1 720 < th dose independent rect. 19 8
686 38.98 radiation 40.0 10 < th dose independent rect. 3 23
693 38.98 precipitation 0.1 720 < th dose dependent rect. 19 8
698 38.99 temperature 10.0 720 > th dose independent rect. 19 8
699 38.99 temperature 30.0 720 < th dose independent rect. 19 8
700 38.99 humidity 50.0 720 > th dose independent rect. 19 8
701 38.99 atmosphere 995.0 720 > th dose independent rect. 19 8
702 38.99 radiation 1.0 720 < th dose independent rect. 19 8
707 38.99 temperature 10.0 720 > th dose independent rect. 3 16
708 38.99 humidity 90.0 90 < th dose dependent rect. 2 1
710 38.99 radiation 20.0 720 < th dose dependent rect. 19 8
721 39.00 humidity 50.0 720 > th dose independent rect. 3 8
726 39.00 humidity 60.0 10 > th dose independent rect. 14 12
731 39.00 wind 9.0 720 < th dose independent rect. 15 16
735 39.00 radiation 1.0 720 < th dose dependent rect. 19 8
741 39.01 wind 1.0 30 > th dose dependent rect. 2 1
745 39.02 humidity 70.0 4320 > th dose independent rect. 10 1
747 39.02 atmosphere 1000.0 30 < th dose independent rect. 7 20
769 39.04 atmosphere 1000.0 10 > th dose independent rect. 21 23
817 39.08 wind 9.0 720 < th dose independent rect. 15 8
833 39.10 wind 1.0 14400 > th dose dependent rect. 11 1
871 39.11 atmosphere 1000.0 10 > th dose independent rect. 2 14
884 39.11 humidity 50.0 4320 > th dose dependent rect. 23 15
895 39.12 humidity 50.0 10 > th dose independent rect. 2 14
898 39.12 wind 9.0 14400 > th dose dependent rect. 13 1
899 39.12 humidity 50.0 14400 > th dose dependent rect. 8 1
904 39.12 radiation 30.0 10 < th dose dependent rect. 16 10
915 39.13 radiation 20.0 10 < th dose independent rect. 16 10
917 39.13 radiation 40.0 30 < th dose independent rect. 14 12
920 39.13 humidity 50.0 4320 > th dose dependent sin 5 NA
934 39.14 wind 1.0 14400 < th dose independent rect. 4 3
947 39.14 humidity 70.0 4320 > th dose independent rect. 8 10
960 39.14 precipitation 0.1 10 < th dose independent rect. 2 14
974 39.14 wind 1.0 30 > th dose independent rect. 3 23
975 39.14 atmosphere 995.0 720 > th dose independent rect. 15 23
989 39.14 precipitation 0.1 10 < th dose dependent rect. 2 14