Os01g0769900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0769900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.49 | 0.509 | 10.4 | 1 | 2.15 | -1.05 | -0.958 | 0.511 | -0.14 | 20.9 | 28.26 | 114 | -- | -- |
| 117.88 | 0.506 | 10.4 | 1.09 | 2.15 | -1.02 | -0.944 | -- | -0.118 | 20.8 | 28.24 | 110 | -- | -- |
| 120.39 | 0.511 | 10.4 | 1.04 | 2.16 | -1.01 | -- | 0.448 | -0.145 | 20.8 | 28.2 | 98 | -- | -- |
| 120.68 | 0.512 | 10.4 | 1.12 | 2.16 | -0.99 | -- | -- | -0.123 | 20.8 | 28.19 | 98 | -- | -- |
| 335.71 | 0.853 | 10.4 | 1.04 | -- | -1.01 | -- | 0.448 | -0.145 | -- | 28.2 | 321 | -- | -- |
| 167.63 | 0.607 | 10.3 | 1.34 | 2.33 | -- | -0.714 | -- | 0.00996 | 19.8 | -- | -- | -- | -- |
| 169.09 | 0.609 | 10.3 | 1.36 | 2.33 | -- | -- | -- | 0.00929 | 19.8 | -- | -- | -- | -- |
| 273.1 | 0.77 | 10.3 | 0.78 | -- | -2.17 | -- | -- | -0.154 | -- | 28.2 | 532 | -- | -- |
| 152.65 | 0.575 | 10.4 | -- | 2.15 | -1.12 | -- | -- | -0.259 | 21 | 28.12 | 99 | -- | -- |
| 462.96 | 1.01 | 10.3 | 1.33 | -- | -- | -- | -- | -0.0239 | -- | -- | -- | -- | -- |
| 218.04 | 0.691 | 10.4 | -- | 2.32 | -- | -- | -- | -0.142 | 19.8 | -- | -- | -- | -- |
| 293.04 | 0.797 | 10.4 | -- | -- | -2.29 | -- | -- | -0.385 | -- | 28.3 | 532 | -- | -- |
| 509.89 | 1.05 | 10.3 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.94 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 3 | 112.94 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 5 | 113.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 6 | 113.18 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 17 | 114.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 30 | 115.09 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 39 | 115.44 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 40 | 115.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 64 | 115.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 75 | 116.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 19 |
| 132 | 116.90 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 204 | 117.71 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 292 | 118.47 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 337 | 118.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 421 | 119.67 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 577 | 121.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 596 | 121.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 601 | 121.98 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 11 |
| 621 | 122.30 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 790 | 124.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 953 | 125.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 999 | 125.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |