Os01g0768600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0768600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.94 | 0.538 | 10.2 | -0.857 | 1.29 | -0.415 | -0.876 | -1.83 | 0.363 | 21.1 | 24.58 | 233 | -- | -- |
| 140.91 | 0.553 | 10.3 | -1.44 | 1.39 | -0.599 | -0.535 | -- | 0.268 | 20.6 | 22.2 | 467 | -- | -- |
| 133.56 | 0.538 | 10.2 | -0.834 | 1.3 | -0.413 | -- | -1.8 | 0.362 | 21.1 | 24.6 | 222 | -- | -- |
| 141.63 | 0.554 | 10.3 | -1.44 | 1.31 | -0.615 | -- | -- | 0.228 | 20.5 | 22.07 | 552 | -- | -- |
| 216.44 | 0.685 | 10.3 | -1.21 | -- | -0.868 | -- | -0.747 | 0.0861 | -- | 25.1 | 539 | -- | -- |
| 157.99 | 0.589 | 10.2 | -1.26 | 1.42 | -- | -0.643 | -- | 0.429 | 20.5 | -- | -- | -- | -- |
| 159.27 | 0.591 | 10.2 | -1.24 | 1.43 | -- | -- | -- | 0.429 | 20.4 | -- | -- | -- | -- |
| 216.96 | 0.686 | 10.3 | -1.55 | -- | -1.03 | -- | -- | -0.00693 | -- | 24.9 | 557 | -- | -- |
| 192.32 | 0.646 | 10.2 | -- | 1.4 | -0.354 | -- | -- | 0.454 | 20.5 | 22.3 | 370 | -- | -- |
| 272.52 | 0.771 | 10.2 | -1.25 | -- | -- | -- | -- | 0.415 | -- | -- | -- | -- | -- |
| 199.66 | 0.661 | 10.2 | -- | 1.43 | -- | -- | -- | 0.567 | 20.4 | -- | -- | -- | -- |
| 277.12 | 0.775 | 10.2 | -- | -- | -0.801 | -- | -- | 0.269 | -- | 25.05 | 540 | -- | -- |
| 313.43 | 0.826 | 10.2 | -- | -- | -- | -- | -- | 0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.25 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 12 |
| 4 | 127.93 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 5 | 128.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 7 | 128.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 9 | 128.43 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 12 | 128.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 18 | 129.37 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 15 |
| 24 | 129.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 26 | 129.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 33 | 130.03 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 35 | 130.12 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 49 | 130.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 53 | 130.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 75 | 130.74 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 89 | 130.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 92 | 131.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 98 | 131.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 117 | 131.35 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 8 |
| 125 | 131.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 134 | 131.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 153 | 131.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 158 | 131.72 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 22 |
| 159 | 131.73 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 160 | 131.73 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 190 | 131.94 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 20 |
| 197 | 131.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 227 | 132.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 277 | 132.51 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 13 |
| 349 | 132.90 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 416 | 133.23 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 521 | 133.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 533 | 133.71 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 552 | 133.79 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 18 |
| 573 | 133.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 615 | 134.07 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 628 | 134.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 629 | 134.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 729 | 134.52 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 760 | 134.65 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 22 |
| 764 | 134.66 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 13 |
| 791 | 134.76 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 23 |
| 820 | 134.88 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 825 | 134.89 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 887 | 135.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 915 | 135.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |