Os01g0767700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DEIH-box RNA/DNA helicase.
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Os01g0767700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DEIH-box RNA/DNA helicase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.43 | 0.223 | 11.7 | 0.306 | 0.175 | -0.597 | -0.587 | 2.23 | -0.037 | 18.3 | 21 | 3778 | -- | -- |
| 26.71 | 0.241 | 11.8 | -0.0248 | 0.196 | -0.528 | -0.533 | -- | -0.0819 | 17.2 | 16.51 | 29724 | -- | -- |
| 23.12 | 0.224 | 11.7 | 0.324 | 0.174 | -0.587 | -- | 2.25 | -0.034 | 17.4 | 21.05 | 3940 | -- | -- |
| 26.62 | 0.24 | 11.8 | 0.0958 | 0.15 | -0.669 | -- | -- | -0.0707 | 16.6 | 14.35 | 24030 | -- | -- |
| 24.58 | 0.231 | 11.7 | 0.299 | -- | -0.589 | -- | 2.15 | -0.0463 | -- | 20.88 | 4027 | -- | -- |
| 32.33 | 0.267 | 11.8 | -0.519 | 0.191 | -- | -0.463 | -- | -0.308 | 17.2 | -- | -- | -- | -- |
| 32.75 | 0.268 | 11.8 | -0.518 | 0.191 | -- | -- | -- | -0.31 | 16.3 | -- | -- | -- | -- |
| 27.96 | 0.246 | 11.8 | 0.0762 | -- | -0.675 | -- | -- | -0.0579 | -- | 10.6 | 24225 | -- | -- |
| 26.48 | 0.24 | 11.8 | -- | 0.163 | -0.589 | -- | -- | -0.0848 | 16.6 | 13.79 | 24159 | -- | -- |
| 34.72 | 0.275 | 11.8 | -0.526 | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
| 39.82 | 0.295 | 11.8 | -- | 0.201 | -- | -- | -- | -0.252 | 16.3 | -- | -- | -- | -- |
| 27.99 | 0.246 | 11.8 | -- | -- | -0.616 | -- | -- | -0.083 | -- | 10.58 | 24242 | -- | -- |
| 42.01 | 0.303 | 11.8 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.14 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 49 | 19.38 | temperature | 15 | 43200 | < th | dose dependent | sin | 6 | NA |
| 259 | 19.64 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 264 | 19.66 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 265 | 19.66 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 269 | 19.67 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 271 | 19.67 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 330 | 19.75 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 346 | 19.76 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 357 | 19.77 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 386 | 19.78 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 439 | 19.81 | temperature | 15 | 43200 | > th | dose independent | sin | 7 | NA |
| 681 | 19.88 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 726 | 19.89 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 776 | 19.90 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 777 | 19.90 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 813 | 19.91 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 850 | 19.92 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 884 | 19.94 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 907 | 19.96 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 969 | 20.00 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 975 | 20.00 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |