Os01g0767000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclear matrix constituent-like protein (Fragment).
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Os01g0767000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nuclear matrix constituent-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.75 | 0.252 | 12.1 | 0.654 | 0.495 | -1.01 | -0.421 | 1.67 | 0.358 | 21.6 | 20.35 | 10 | -- | -- |
| 31.1 | 0.26 | 12.2 | 0.363 | 0.503 | -0.9 | -0.707 | -- | 0.278 | 21.8 | 19.75 | 12 | -- | -- |
| 29.26 | 0.254 | 12.1 | 0.707 | 0.494 | -1 | -- | 1.99 | 0.363 | 21.8 | 20.51 | 9 | -- | -- |
| 32.47 | 0.265 | 12.2 | 0.415 | 0.508 | -1.12 | -- | -- | 0.276 | 22.1 | 13.77 | 8 | -- | -- |
| 42.74 | 0.306 | 12.1 | 0.779 | -- | -1.23 | -- | 2.13 | 0.405 | -- | 20.2 | 6 | -- | -- |
| 43.3 | 0.308 | 12.2 | 0.174 | 0.701 | -- | -0.471 | -- | 0.115 | 23.5 | -- | -- | -- | -- |
| 44.24 | 0.311 | 12.2 | 0.193 | 0.703 | -- | -- | -- | 0.117 | 23.6 | -- | -- | -- | -- |
| 46.34 | 0.318 | 12.1 | 0.468 | -- | -1.43 | -- | -- | 0.314 | -- | 13.03 | 3 | -- | -- |
| 36.41 | 0.283 | 12.2 | -- | 0.532 | -0.92 | -- | -- | 0.204 | 22.5 | 13.77 | 8 | -- | -- |
| 75.27 | 0.405 | 12.2 | 0.212 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 45.22 | 0.315 | 12.2 | -- | 0.705 | -- | -- | -- | 0.0955 | 23.6 | -- | -- | -- | -- |
| 51.79 | 0.336 | 12.2 | -- | -- | -1.28 | -- | -- | 0.245 | -- | 14.09 | 2 | -- | -- |
| 76.46 | 0.408 | 12.2 | -- | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.99 | temperature | 20 | 10 | > th | dose dependent | sin | 22 | NA |
| 3 | 27.07 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 8 | 27.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 21 | 27.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 23 | 27.66 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 24 | 27.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 26 | 27.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 34 | 27.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 41 | 27.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 42 | 28.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 50 | 28.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 86 | 28.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 92 | 28.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 107 | 28.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 119 | 28.81 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 126 | 28.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 135 | 28.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 146 | 28.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 148 | 28.99 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 156 | 29.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 167 | 29.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 199 | 29.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 204 | 29.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 223 | 29.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 236 | 29.42 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 345 | 29.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 354 | 29.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 428 | 29.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 559 | 30.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 578 | 30.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 646 | 30.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 714 | 30.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 728 | 30.39 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 761 | 30.43 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 769 | 30.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 839 | 30.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 938 | 30.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 980 | 30.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 19 |