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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0766400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0302) R2 : 0.37
β1 : 1.25 (0.11) R2dD : 0.184 R2D : 0.142
β2 : 0.849 (0.0754) R2dC : 0.176 R2C : 0.159
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0642) R2dN8 : 0.0621 R2N8 : 0.00924
σ : 0.566
deviance : 146.09
__
_____
C
peak time of C : 20.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126 0.527 3.54 1.08 0.879 0.848 1.52 1.36 0.462 21.2 80.95 1293 -- --
128.45 0.528 3.55 1.22 0.866 0.886 1.42 -- 0.48 21.1 79.95 1312 -- --
133.18 0.537 3.54 1.01 0.843 0.768 -- 1.51 0.459 20.7 81.31 1466 -- --
134.99 0.541 3.55 1.25 0.855 0.863 -- -- 0.475 20.5 67 1501 -- --
173.32 0.613 3.52 1.07 -- 0.885 -- 1.28 0.445 -- 76.5 1464 -- --
139.81 0.554 3.57 1.29 0.85 -- 1.38 -- 0.372 20.8 -- -- -- --
146.09 0.566 3.57 1.25 0.849 -- -- -- 0.372 20.7 -- -- -- --
174.36 0.615 3.53 1.24 -- 0.868 -- -- 0.461 -- 67.56 1461 -- --
167.43 0.603 3.54 -- 1.01 1.21 -- -- 0.513 21.1 82 2450 -- --
186.74 0.639 3.55 1.25 -- -- -- -- 0.365 -- -- -- -- --
187.3 0.64 3.6 -- 0.845 -- -- -- 0.233 20.8 -- -- -- --
209.42 0.674 3.53 -- -- 1.09 -- -- 0.439 -- 84 1488 -- --
227.84 0.705 3.58 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.58 precipitation 0.1 14400 > th dose dependent rect. 17 1
2 124.00 humidity 80.0 1440 > th dose dependent rect. 22 17
3 124.03 humidity 80.0 1440 > th dose dependent sin 4 NA
4 124.04 precipitation 0.1 14400 > th dose independent rect. 17 1
7 124.10 precipitation 0.1 14400 < th dose independent rect. 17 1
8 124.10 precipitation 0.1 14400 < th dose dependent rect. 17 1
12 124.24 humidity 70.0 1440 > th dose dependent rect. 22 14
19 124.34 wind 5.0 14400 < th dose independent rect. 14 1
20 124.34 humidity 80.0 14400 > th dose dependent rect. 13 3
23 124.35 wind 5.0 14400 > th dose independent rect. 14 1
25 124.38 humidity 80.0 1440 > th dose dependent rect. 2 13
42 124.57 wind 3.0 14400 > th dose dependent rect. 14 1
45 124.63 humidity 80.0 14400 > th dose independent rect. 15 1
72 124.81 humidity 80.0 1440 > th dose dependent rect. 3 8
149 125.24 humidity 90.0 1440 < th dose independent rect. 3 12
155 125.27 wind 1.0 43200 > th dose dependent rect. 1 1
189 125.44 wind 9.0 14400 < th dose dependent rect. 14 1
280 125.86 precipitation 0.1 4320 > th dose dependent rect. 19 19
293 125.91 precipitation 0.1 4320 > th dose dependent rect. 18 12
319 125.99 humidity 80.0 720 > th dose dependent rect. 19 6
337 126.03 precipitation 0.1 4320 < th dose independent rect. 18 23
344 126.03 precipitation 0.1 4320 < th dose dependent rect. 18 23
347 126.05 precipitation 0.1 4320 > th dose independent rect. 18 23
356 126.08 precipitation 0.1 4320 < th dose independent rect. 19 1
357 126.08 humidity 90.0 1440 > th dose independent rect. 23 21
358 126.08 precipitation 0.1 4320 < th dose dependent rect. 19 1
373 126.12 humidity 90.0 1440 < th dose independent sin 3 NA
379 126.13 humidity 50.0 720 > th dose dependent rect. 19 8
400 126.20 precipitation 0.1 4320 > th dose independent rect. 18 20
401 126.20 precipitation 0.1 4320 < th dose independent rect. 18 21
405 126.20 precipitation 0.1 4320 < th dose dependent rect. 18 21
423 126.24 wind 5.0 43200 < th dose dependent rect. 1 2
427 126.24 precipitation 0.1 4320 > th dose dependent rect. 22 19
430 126.25 precipitation 0.1 14400 > th dose dependent rect. 13 3
453 126.32 precipitation 0.1 4320 < th dose independent rect. 18 14
454 126.32 precipitation 0.1 4320 < th dose dependent rect. 18 14
457 126.33 precipitation 0.1 4320 > th dose independent rect. 18 14
458 126.33 humidity 90.0 1440 > th dose independent rect. 19 20
462 126.34 precipitation 0.1 4320 < th dose independent rect. 18 12
465 126.34 precipitation 0.1 4320 < th dose dependent rect. 18 12
470 126.35 precipitation 0.1 4320 > th dose independent rect. 19 1
477 126.37 precipitation 0.1 4320 > th dose independent rect. 18 12
480 126.37 precipitation 0.1 4320 > th dose dependent rect. 19 2
496 126.40 humidity 90.0 720 < th dose dependent rect. 19 6
501 126.41 precipitation 0.1 4320 > th dose independent rect. 18 18
511 126.43 humidity 50.0 1440 > th dose dependent rect. 3 6
512 126.43 precipitation 0.1 4320 > th dose dependent rect. 22 17
515 126.44 humidity 90.0 1440 > th dose independent rect. 22 17
522 126.45 precipitation 0.1 14400 < th dose independent rect. 13 3
524 126.45 precipitation 0.1 14400 < th dose dependent rect. 13 3
550 126.49 humidity 90.0 1440 < th dose independent rect. 23 16
568 126.55 humidity 90.0 1440 > th dose independent rect. 3 12
569 126.55 humidity 80.0 1440 > th dose dependent no NA NA
587 126.59 precipitation 0.1 14400 > th dose independent rect. 13 3
588 126.59 humidity 90.0 1440 < th dose independent rect. 3 6
609 126.64 precipitation 0.1 4320 < th dose independent rect. 22 19
615 126.64 precipitation 0.1 4320 < th dose dependent rect. 22 19
633 126.67 humidity 90.0 1440 > th dose independent rect. 19 14
654 126.70 humidity 80.0 1440 > th dose dependent rect. 2 23
656 126.71 precipitation 0.1 4320 > th dose independent rect. 22 19
690 126.75 humidity 80.0 1440 > th dose dependent rect. 5 23
696 126.76 humidity 90.0 1440 < th dose independent rect. 19 20
728 126.81 humidity 90.0 1440 < th dose independent rect. 23 21
740 126.82 humidity 80.0 1440 > th dose dependent rect. 7 23
757 126.85 precipitation 0.1 4320 > th dose dependent rect. 3 12
759 126.86 humidity 90.0 1440 > th dose independent sin 3 NA
760 126.86 humidity 90.0 1440 > th dose independent rect. 3 17
789 126.91 humidity 90.0 1440 < th dose independent rect. 2 18
794 126.92 humidity 90.0 1440 > th dose independent sin 8 NA
821 126.95 humidity 50.0 1440 > th dose dependent rect. 5 3
891 127.07 precipitation 0.1 4320 > th dose independent rect. 3 12
892 127.07 precipitation 0.1 4320 < th dose independent rect. 3 12
897 127.07 precipitation 0.1 4320 < th dose dependent rect. 3 12
899 127.07 humidity 90.0 720 > th dose dependent rect. 5 19
910 127.09 humidity 80.0 14400 < th dose independent rect. 15 1
952 127.14 humidity 90.0 1440 < th dose independent rect. 5 3
954 127.14 humidity 90.0 1440 > th dose independent rect. 22 11
998 127.18 precipitation 0.1 4320 > th dose dependent sin 7 NA