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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0766300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0505) R2 : 0.745
β1 : 6.45 (0.195) R2dD : 0.704 R2D : 0.338
β2 : 1.71 (0.12) R2dC : 0.11 R2C : 0.0395
β3 : -2.49 (0.162) R2dE : 0.16 R2E : -0.164
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.85 (0.11) R2dN8 : 0.225 R2N8 : -0.00999
σ : 0.938
deviance : 406
__
_____
C
peak time of C : 23.8
E
wheather : temperature
threshold : 23.4
memory length : 5477
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
405.41 0.946 5.98 7.15 1.79 -2.75 -0.374 3.8 2 0.0571 24.93 1301 -- --
406.87 0.939 6.09 6.44 1.72 -2.38 -0.0471 -- 1.81 24 23.47 5511 -- --
405.5 0.938 5.98 7.14 1.84 -2.81 -- 3.7 2.03 0.054 24.69 1266 -- --
406 0.938 6.07 6.45 1.71 -2.49 -- -- 1.85 23.8 23.4 5477 -- --
561.3 1.1 5.93 7.27 -- -2.64 -- 3.77 2.11 -- 24.33 1595 -- --
618.56 1.17 6.17 5.37 1.46 -- -0.606 -- 1.46 23.6 -- -- -- --
620.15 1.17 6.17 5.39 1.46 -- -- -- 1.46 23.6 -- -- -- --
550.49 1.09 6.08 6.26 -- -2.22 -- -- 1.72 -- 26.13 5948 -- --
1314.46 1.69 6.37 -- 1.72 -1.34 -- -- 0.603 23.9 29.97 1029 -- --
754.13 1.28 6.13 5.43 -- -- -- -- 1.48 -- -- -- -- --
1386.6 1.74 6.3 -- 1.52 -- -- -- 0.86 23.8 -- -- -- --
1475.69 1.79 6.3 -- -- -1.13 -- -- 0.74 -- 30 6018 -- --
1532.91 1.83 6.27 -- -- -- -- -- 0.875 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 383.32 wind 9 43200 > th dose dependent rect. 19 3
2 384.38 wind 5 43200 > th dose dependent rect. 20 1
4 385.57 wind 9 43200 > th dose independent rect. 19 3
5 386.19 wind 9 43200 < th dose independent rect. 19 3
12 393.08 wind 9 43200 > th dose dependent rect. 19 11
16 395.11 wind 9 43200 > th dose independent rect. 19 10
17 395.61 wind 9 43200 > th dose dependent rect. 17 13
23 396.89 wind 9 43200 > th dose independent rect. 17 13
24 397.04 wind 9 43200 > th dose independent rect. 19 6
30 398.07 wind 9 43200 < th dose independent rect. 19 11
36 398.48 wind 9 43200 > th dose dependent rect. 17 6
38 398.99 wind 9 43200 < th dose independent rect. 19 9
40 399.29 wind 9 43200 < th dose independent rect. 17 13
41 399.39 wind 9 43200 < th dose independent rect. 19 6
42 399.57 wind 9 43200 > th dose dependent rect. 19 7
47 400.36 wind 9 43200 > th dose independent rect. 17 8
56 401.35 wind 9 43200 > th dose independent rect. 17 6
61 401.71 wind 9 43200 < th dose independent rect. 17 4
65 402.09 wind 9 43200 > th dose independent rect. 17 4
72 403.09 wind 9 43200 < th dose independent rect. 17 8
108 406.07 wind 5 43200 > th dose independent rect. 17 22
113 406.32 wind 5 43200 > th dose independent rect. 15 23
125 406.77 temperature 25 1440 > th dose dependent rect. 23 20
132 407.08 temperature 25 1440 > th dose dependent rect. 7 12
144 407.40 wind 5 43200 < th dose independent rect. 16 22
154 407.56 temperature 25 1440 > th dose dependent rect. 10 9
166 407.72 temperature 25 1440 > th dose dependent rect. 11 6
178 407.85 wind 5 43200 > th dose dependent rect. 17 22
180 407.87 temperature 25 1440 > th dose dependent sin 23 NA
183 407.89 temperature 25 1440 > th dose dependent rect. 11 22
216 408.29 temperature 25 1440 > th dose dependent rect. 7 19
245 408.60 radiation 20 1440 > th dose dependent rect. 16 1
282 408.81 temperature 25 1440 > th dose dependent no NA NA
288 408.84 temperature 25 1440 > th dose dependent rect. 18 23
304 408.97 radiation 20 1440 < th dose independent rect. 16 6
306 408.97 temperature 25 1440 > th dose dependent rect. 13 23
308 408.98 temperature 25 1440 > th dose dependent rect. 10 16
310 409.03 radiation 20 1440 < th dose independent rect. 16 8
333 409.19 wind 7 43200 > th dose dependent sin 14 NA
348 409.30 temperature 25 1440 > th dose dependent rect. 15 23
370 409.51 temperature 25 1440 > th dose dependent rect. 11 3
371 409.52 temperature 20 1440 > th dose dependent rect. 16 1
379 409.62 radiation 20 1440 < th dose independent rect. 16 13
385 409.65 temperature 30 1440 > th dose independent rect. 11 1
416 409.97 humidity 60 14400 < th dose dependent rect. 17 1
419 410.04 radiation 20 1440 < th dose independent rect. 16 2
421 410.06 temperature 30 1440 < th dose independent rect. 11 1
445 410.66 wind 7 43200 > th dose independent sin 13 NA
461 410.88 radiation 20 1440 < th dose independent rect. 16 10
514 411.78 wind 5 43200 > th dose independent rect. 24 23
516 411.81 wind 7 43200 < th dose independent sin 14 NA
518 411.85 wind 5 43200 > th dose independent no NA NA
543 412.14 temperature 25 4320 < th dose independent rect. 7 1
548 412.21 temperature 25 4320 > th dose independent rect. 7 1
556 412.30 wind 5 43200 > th dose independent rect. 3 23
561 412.36 humidity 50 14400 < th dose independent rect. 16 18
573 412.48 wind 5 43200 > th dose dependent rect. 24 23
589 412.65 wind 5 43200 > th dose independent rect. 5 23
590 412.69 wind 5 43200 > th dose dependent rect. 10 23
600 412.80 wind 5 43200 > th dose dependent no NA NA
606 412.84 wind 5 43200 > th dose independent sin 2 NA
608 412.86 humidity 50 14400 > th dose independent rect. 16 17
609 412.86 wind 5 43200 > th dose independent rect. 7 23
612 412.91 wind 5 43200 > th dose dependent rect. 7 23
615 412.93 wind 5 43200 > th dose dependent rect. 3 23
618 412.97 temperature 20 1440 > th dose dependent rect. 13 1
635 413.11 wind 5 43200 > th dose dependent rect. 5 23
670 413.36 temperature 25 4320 > th dose dependent rect. 9 1
679 413.46 wind 5 43200 < th dose independent sin 3 NA
731 413.91 wind 5 43200 > th dose independent rect. 3 13
734 413.95 humidity 50 14400 < th dose independent rect. 16 1
750 414.07 wind 5 43200 > th dose independent rect. 10 23
777 414.33 humidity 50 14400 > th dose independent rect. 16 1
783 414.38 humidity 50 14400 < th dose dependent rect. 16 18
791 414.48 temperature 30 1440 < th dose independent rect. 10 8
817 414.58 wind 5 43200 < th dose independent rect. 24 23
819 414.60 wind 5 43200 < th dose independent no NA NA
821 414.61 temperature 30 1440 < th dose independent rect. 16 1
829 414.72 temperature 30 1440 > th dose independent rect. 16 1
841 414.78 humidity 50 14400 > th dose independent rect. 16 8
845 414.80 humidity 50 14400 > th dose independent rect. 16 6
848 414.82 wind 5 43200 > th dose independent rect. 24 16
855 414.88 humidity 50 14400 > th dose independent rect. 16 13
858 414.89 wind 5 43200 > th dose independent rect. 5 10
874 415.05 wind 5 43200 < th dose independent rect. 3 13
891 415.14 humidity 50 14400 > th dose independent rect. 16 10
897 415.16 temperature 25 4320 > th dose dependent rect. 7 4
900 415.20 wind 5 43200 < th dose independent rect. 23 17
909 415.26 wind 5 43200 < th dose independent rect. 3 23
924 415.40 temperature 30 1440 > th dose independent rect. 10 8
958 415.65 temperature 30 1440 < th dose independent rect. 6 12
959 415.65 temperature 30 1440 < th dose independent rect. 2 16
961 415.66 temperature 30 1440 < th dose independent rect. 4 14
963 415.66 temperature 30 1440 < th dose independent rect. 19 23
968 415.69 wind 5 43200 < th dose independent rect. 5 23
970 415.70 wind 5 43200 < th dose independent rect. 5 10
977 415.72 temperature 30 1440 < th dose independent rect. 23 19
989 415.75 radiation 20 1440 > th dose independent rect. 16 1