Os01g0766000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0766000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Multi antimicrobial extrusion protein MatE family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.28 | 0.746 | 2.82 | 0.389 | 0.13 | 0.371 | -0.237 | 1.37 | 0.0765 | 9.51 | 60.9 | 4307 | -- | -- |
| 253.18 | 0.741 | 2.83 | 0.257 | 0.132 | 0.851 | -0.272 | -- | 0.0804 | 9.5 | 52.91 | 4340 | -- | -- |
| 252.49 | 0.74 | 2.82 | 0.382 | 0.131 | 0.376 | -- | 1.37 | 0.076 | 9.38 | 61.45 | 4304 | -- | -- |
| 253.37 | 0.741 | 2.84 | 0.243 | 0.137 | 0.856 | -- | -- | 0.0769 | 9.34 | 52.89 | 4339 | -- | -- |
| 253.47 | 0.741 | 2.82 | 0.397 | -- | 0.378 | -- | 1.36 | 0.0858 | -- | 63.67 | 4306 | -- | -- |
| 263.97 | 0.762 | 2.85 | 0.545 | 0.116 | -- | -0.306 | -- | 0.00419 | 9.31 | -- | -- | -- | -- |
| 264.29 | 0.761 | 2.85 | 0.533 | 0.121 | -- | -- | -- | 0.00329 | 8.66 | -- | -- | -- | -- |
| 254.46 | 0.743 | 2.84 | 0.246 | -- | 0.845 | -- | -- | 0.075 | -- | 52.8 | 4345 | -- | -- |
| 254.65 | 0.743 | 2.84 | -- | 0.138 | 0.983 | -- | -- | 0.0589 | 9.3 | 52.5 | 4339 | -- | -- |
| 265.11 | 0.761 | 2.86 | 0.533 | -- | -- | -- | -- | 0.00433 | -- | -- | -- | -- | -- |
| 271.76 | 0.771 | 2.87 | -- | 0.123 | -- | -- | -- | -0.056 | 8.34 | -- | -- | -- | -- |
| 255.77 | 0.745 | 2.85 | -- | -- | 0.972 | -- | -- | 0.0569 | -- | 52.43 | 4345 | -- | -- |
| 272.6 | 0.771 | 2.87 | -- | -- | -- | -- | -- | -0.0548 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.69 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 8 | 243.69 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 15 | 243.75 | temperature | 30.0 | 10 | > th | dose independent | rect. | 15 | 2 |
| 30 | 246.70 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 31 | 246.91 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 33 | 247.33 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 34 | 247.54 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 35 | 247.69 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 36 | 248.00 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 39 | 248.26 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 43 | 248.52 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 47 | 248.77 | humidity | 50.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 57 | 248.98 | humidity | 70.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 62 | 249.21 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 70 | 249.39 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 76 | 249.50 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 79 | 249.66 | wind | 3.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 85 | 249.91 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 86 | 249.94 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 92 | 250.10 | humidity | 90.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 99 | 250.19 | wind | 3.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 106 | 250.31 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 110 | 250.48 | radiation | 30.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 112 | 250.50 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 122 | 250.74 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 138 | 251.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 141 | 251.17 | wind | 5.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 142 | 251.18 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 144 | 251.25 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 154 | 251.35 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 155 | 251.36 | wind | 5.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 156 | 251.37 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 161 | 251.43 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 164 | 251.45 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 182 | 251.49 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 13 |
| 184 | 251.50 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 211 | 251.73 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 215 | 251.75 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 222 | 251.76 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 21 | 16 |
| 239 | 251.77 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 253 | 251.84 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 255 | 251.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 257 | 251.86 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 17 |
| 262 | 251.88 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 264 | 251.88 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 334 | 251.96 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 353 | 251.97 | humidity | 60.0 | 4320 | < th | dose dependent | sin | 19 | NA |
| 369 | 251.98 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 383 | 251.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 384 | 251.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 453 | 252.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 455 | 252.11 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 456 | 252.11 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 459 | 252.11 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 460 | 252.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 463 | 252.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 499 | 252.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 515 | 252.20 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 519 | 252.21 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 562 | 252.27 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 587 | 252.30 | humidity | 60.0 | 4320 | < th | dose dependent | no | NA | NA |
| 733 | 252.37 | humidity | 50.0 | 4320 | > th | dose independent | sin | 17 | NA |
| 763 | 252.42 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 785 | 252.45 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 797 | 252.46 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 802 | 252.47 | humidity | 60.0 | 4320 | > th | dose independent | sin | 6 | NA |
| 879 | 252.58 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 5 | 12 |
| 911 | 252.61 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 929 | 252.63 | wind | 5.0 | 720 | < th | dose independent | rect. | 23 | 4 |