Os01g0764900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0764900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.61 | 0.386 | 11.2 | 1.63 | 1.75 | 0.282 | -0.933 | 2.14 | 0.00881 | 16.4 | 1002 | 10854 | -- | -- |
| 70.11 | 0.39 | 11.2 | 1.53 | 1.74 | 0.66 | -0.922 | -- | 0.052 | 16.4 | 1002 | 10940 | -- | -- |
| 69.94 | 0.39 | 11.2 | 1.62 | 1.74 | 0.29 | -- | 2.09 | 0.0079 | 16.3 | 1002 | 11089 | -- | -- |
| 71.91 | 0.395 | 11.2 | 1.5 | 1.73 | 0.657 | -- | -- | 0.0151 | 16.4 | 1000 | 10970 | -- | -- |
| 233.04 | 0.711 | 11.2 | 1.54 | -- | 0.428 | -- | 1.93 | -0.0298 | -- | 1002 | 10380 | -- | -- |
| 79.08 | 0.417 | 11.2 | 1.62 | 1.76 | -- | -0.907 | -- | -0.0347 | 16.4 | -- | -- | -- | -- |
| 81.32 | 0.422 | 11.2 | 1.61 | 1.75 | -- | -- | -- | -0.0396 | 16.3 | -- | -- | -- | -- |
| 234.95 | 0.714 | 11.2 | 1.43 | -- | 0.69 | -- | -- | 0.0062 | -- | 1002 | 11920 | -- | -- |
| 126.34 | 0.524 | 11.3 | -- | 1.7 | 0.969 | -- | -- | -0.104 | 16.4 | 999.2 | 12044 | -- | -- |
| 246.29 | 0.733 | 11.2 | 1.54 | -- | -- | -- | -- | -0.086 | -- | -- | -- | -- | -- |
| 149.64 | 0.572 | 11.3 | -- | 1.72 | -- | -- | -- | -0.219 | 16.4 | -- | -- | -- | -- |
| 283.11 | 0.784 | 11.2 | -- | -- | 1.01 | -- | -- | -0.13 | -- | 999 | 12274 | -- | -- |
| 308.9 | 0.82 | 11.3 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.54 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 4 | 65.11 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 1 |
| 15 | 65.51 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 18 | 65.69 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 5 |
| 21 | 65.80 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 23 | 65.85 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 26 | 65.90 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 2 |
| 33 | 66.03 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 41 | 66.16 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 52 | 66.22 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 12 |
| 84 | 66.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 171 | 67.08 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 10 |
| 232 | 67.31 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 11 |
| 238 | 67.33 | temperature | 20 | 270 | < th | dose dependent | rect. | 20 | 9 |
| 243 | 67.35 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 11 |
| 317 | 67.66 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 329 | 67.70 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 340 | 67.73 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 351 | 67.77 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 363 | 67.84 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 388 | 67.87 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 389 | 67.88 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 407 | 67.91 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 410 | 67.92 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 454 | 67.93 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 464 | 67.93 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 471 | 67.94 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 493 | 67.94 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 545 | 67.96 | wind | 9 | 4320 | < th | dose independent | sin | 14 | NA |
| 566 | 67.97 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 573 | 67.98 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 588 | 67.99 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 606 | 68.01 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 607 | 68.01 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 1 | NA |
| 652 | 68.03 | wind | 7 | 4320 | > th | dose dependent | sin | 14 | NA |
| 664 | 68.04 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 678 | 68.05 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 688 | 68.06 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 769 | 68.09 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |
| 777 | 68.10 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 1 | NA |
| 857 | 68.13 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 902 | 68.15 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 936 | 68.16 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 950 | 68.17 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 951 | 68.17 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 968 | 68.17 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 970 | 68.17 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 997 | 68.18 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 999 | 68.18 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 18 | 23 |