Os01g0764500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hemimethylated DNA-binding region domain containing protein.
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Os01g0764500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hemimethylated DNA-binding region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.12 | 0.274 | 12.2 | -1.06 | 0.645 | 0.372 | 0.0671 | 1.11 | -0.36 | 17.1 | 29.73 | 292 | -- | -- |
| 34.29 | 0.273 | 12.2 | -0.96 | 0.636 | 0.504 | -0.0143 | -- | -0.362 | 17.2 | 30.2 | 309 | -- | -- |
| 34.13 | 0.272 | 12.2 | -1.05 | 0.646 | 0.375 | -- | 1.05 | -0.357 | 17.1 | 29.76 | 291 | -- | -- |
| 34.26 | 0.273 | 12.2 | -0.957 | 0.644 | 0.5 | -- | -- | -0.358 | 17.2 | 29.97 | 316 | -- | -- |
| 47.77 | 0.322 | 12.1 | -0.318 | -- | 0.56 | -- | -3.05 | -0.34 | -- | 31.34 | 5622 | -- | -- |
| 39.66 | 0.295 | 12.2 | -1.03 | 0.471 | -- | -0.322 | -- | -0.33 | 17.2 | -- | -- | -- | -- |
| 39.92 | 0.296 | 12.2 | -1.03 | 0.469 | -- | -- | -- | -0.332 | 17.1 | -- | -- | -- | -- |
| 48.7 | 0.325 | 12.2 | -0.975 | -- | 0.269 | -- | -- | -0.38 | -- | 30.5 | 2583 | -- | -- |
| 57.76 | 0.354 | 12.1 | -- | 0.725 | 0.665 | -- | -- | -0.254 | 17.1 | 29.9 | 341 | -- | -- |
| 51.44 | 0.335 | 12.1 | -1.05 | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
| 67.9 | 0.385 | 12.1 | -- | 0.487 | -- | -- | -- | -0.217 | 17 | -- | -- | -- | -- |
| 60.45 | 0.362 | 12.1 | -- | -- | 0.472 | -- | -- | -0.0217 | -- | 21.64 | 46864 | -- | -- |
| 80.37 | 0.418 | 12.1 | -- | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.48 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 11 |
| 4 | 32.14 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 21 |
| 28 | 33.01 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 22 |
| 35 | 33.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 58 | 33.45 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 14 |
| 68 | 33.55 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 6 |
| 81 | 33.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 106 | 33.88 | humidity | 60 | 270 | > th | dose independent | rect. | 6 | 19 |
| 110 | 33.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 125 | 34.02 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 138 | 34.09 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 148 | 34.11 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 153 | 34.13 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 11 |
| 159 | 34.15 | radiation | 30 | 720 | < th | dose independent | rect. | 15 | 18 |
| 173 | 34.20 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 186 | 34.23 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 188 | 34.23 | humidity | 80 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 199 | 34.27 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 7 |
| 205 | 34.29 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 23 |
| 208 | 34.30 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 209 | 34.30 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 341 | 34.33 | humidity | 60 | 270 | > th | dose independent | rect. | 6 | 10 |
| 344 | 34.33 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 443 | 34.53 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 447 | 34.54 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 449 | 34.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 460 | 34.56 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 482 | 34.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 18 |
| 500 | 34.64 | humidity | 90 | 90 | < th | dose independent | rect. | 23 | 13 |
| 502 | 34.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 505 | 34.65 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 535 | 34.71 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 14 |
| 557 | 34.74 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 589 | 34.76 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 615 | 34.81 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 666 | 34.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 673 | 34.86 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 685 | 34.87 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 689 | 34.87 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 691 | 34.87 | wind | 7 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 696 | 34.88 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 10 |
| 708 | 34.89 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 4 |
| 727 | 34.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 729 | 34.90 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 7 |
| 734 | 34.90 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 745 | 34.91 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 772 | 34.92 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 793 | 34.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 807 | 34.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 811 | 34.95 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 11 |
| 818 | 34.95 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 824 | 34.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 843 | 34.97 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 12 |
| 865 | 34.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 894 | 35.00 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 916 | 35.01 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 918 | 35.01 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 6 |
| 967 | 35.03 | wind | 7 | 270 | < th | dose independent | rect. | 21 | 14 |
| 986 | 35.04 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 14 |