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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0763900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : X8 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.0436) R2 : 0.576
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.6 (0.107) R2dC : 0.549 R2C : 0.548
β3 : 2.78 (0.53) R2dE : 0.0254 R2E : 0.0269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.174 (0.0919) R2dN8 : 0.00432 R2N8 : -0.00203
σ : 0.817
deviance : 308.05
__
_____
C
peak time of C : 21.4
E
wheather : wind
threshold : 9.733
memory length : 187
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.87 0.823 4.19 0.227 2.6 0.926 -0.0652 -6.32 0.215 21.4 8.966 225 -- --
306.44 0.815 4.23 0.257 2.59 2.62 -0.0993 -- 0.173 21.4 9.772 193 -- --
305.27 0.814 4.19 0.222 2.6 1 -- -8.15 0.214 21.4 10 192 -- --
306.04 0.815 4.21 0.269 2.6 2.94 -- -- 0.207 21.4 9.702 193 -- --
679.5 1.21 4.09 0.305 -- 1.4 -- -8.27 0.264 -- 8.03 582 -- --
325.69 0.846 4.23 0.108 2.62 -- -0.0259 -- 0.15 21.3 -- -- -- --
325.69 0.845 4.23 0.109 2.62 -- -- -- 0.15 21.3 -- -- -- --
539.08 1.08 4.18 0.923 -- 3.56 -- -- 0.0503 -- -11.35 608 -- --
308.05 0.817 4.22 -- 2.6 2.78 -- -- 0.174 21.4 9.733 187 -- --
724.51 1.26 4.16 0.12 -- -- -- -- 0.138 -- -- -- -- --
326 0.845 4.23 -- 2.62 -- -- -- 0.138 21.3 -- -- -- --
559.58 1.1 4.2 -- -- 3.22 -- -- -0.0339 -- -8.066 603 -- --
724.89 1.26 4.16 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.77 wind 9 720 < th dose independent rect. 16 23
2 303.41 wind 1 43200 < th dose independent rect. 8 1
3 303.74 temperature 25 270 > th dose dependent rect. 10 4
4 303.95 temperature 25 270 > th dose dependent rect. 9 6
7 304.43 temperature 25 270 > th dose dependent rect. 4 11
14 304.78 radiation 20 10 > th dose independent rect. 16 1
44 305.04 wind 7 10 < th dose independent rect. 3 23
45 305.07 temperature 25 270 > th dose dependent rect. 11 2
57 305.81 temperature 30 90 < th dose dependent rect. 9 4
58 305.85 temperature 30 720 < th dose dependent rect. 5 5
59 305.89 wind 7 270 < th dose independent rect. 9 22
60 305.95 wind 7 720 < th dose independent rect. 10 5
62 305.98 temperature 30 270 < th dose dependent rect. 6 7
64 306.10 wind 9 270 > th dose dependent sin 10 NA
66 306.15 wind 7 10 < th dose independent rect. 12 11
69 306.36 wind 9 270 > th dose independent sin 10 NA
74 306.40 wind 7 90 > th dose dependent rect. 16 19
76 306.48 temperature 10 720 > th dose dependent rect. 3 10
78 306.56 temperature 30 10 < th dose dependent rect. 8 5
80 306.63 wind 9 720 > th dose dependent rect. 22 18
83 306.73 wind 9 720 > th dose independent rect. 22 18
88 306.77 wind 9 270 > th dose dependent rect. 14 22
90 306.78 wind 7 10 < th dose independent rect. 3 13
106 306.89 wind 9 720 > th dose dependent rect. 1 15
113 306.95 wind 9 720 > th dose dependent rect. 9 7
126 307.05 humidity 80 720 < th dose independent rect. 15 1
127 307.06 radiation 20 10 > th dose dependent rect. 16 1
158 307.09 wind 7 720 < th dose independent rect. 1 14
159 307.11 wind 9 720 > th dose independent rect. 1 15
162 307.11 wind 1 43200 < th dose dependent rect. 8 1
171 307.20 atmosphere 1005 14400 < th dose independent rect. 11 2
172 307.20 wind 9 720 > th dose independent rect. 9 7
182 307.20 wind 9 270 > th dose dependent rect. 19 23
186 307.23 wind 9 270 > th dose independent rect. 13 23
194 307.26 wind 1 30 > th dose dependent rect. 16 20
196 307.29 atmosphere 1005 14400 > th dose independent rect. 11 1
197 307.31 radiation 40 90 > th dose independent rect. 15 1
214 307.31 radiation 40 90 > th dose dependent rect. 15 1
232 307.33 wind 9 720 > th dose dependent sin 3 NA
235 307.41 wind 9 720 > th dose independent sin 4 NA
253 307.46 wind 7 90 > th dose independent rect. 16 19
258 307.49 temperature 20 90 < th dose dependent rect. 9 13
262 307.51 temperature 30 10 < th dose dependent rect. 10 2
270 307.57 atmosphere 1000 43200 > th dose dependent rect. 2 1
288 307.62 atmosphere 1000 43200 > th dose dependent rect. 23 1
290 307.63 wind 9 1440 < th dose independent rect. 11 2
292 307.63 temperature 25 270 > th dose dependent sin 3 NA
298 307.66 wind 9 270 > th dose dependent no NA NA
315 307.66 wind 9 270 > th dose dependent rect. 9 17
331 307.66 wind 9 270 > th dose dependent rect. 1 22
350 307.68 atmosphere 1000 43200 > th dose dependent rect. 23 5
354 307.70 wind 9 270 > th dose dependent rect. 9 14
410 307.79 wind 9 270 < th dose independent no NA NA
416 307.80 wind 9 270 > th dose independent rect. 16 23
420 307.81 wind 9 270 < th dose independent sin 10 NA
424 307.82 wind 9 720 < th dose independent rect. 3 18
448 307.88 wind 7 10 > th dose independent rect. 16 22
462 307.90 atmosphere 1000 43200 > th dose dependent rect. 5 1
485 307.95 wind 9 1440 < th dose independent rect. 23 14
490 307.95 temperature 10 90 > th dose dependent rect. 3 12
504 307.98 atmosphere 1015 43200 < th dose dependent rect. 2 1
507 307.98 temperature 30 90 < th dose dependent rect. 9 8
511 307.99 wind 9 1440 > th dose dependent rect. 10 3
535 308.02 atmosphere 1000 43200 > th dose dependent sin 7 NA
540 308.03 wind 9 1440 > th dose independent rect. 10 2
616 308.08 atmosphere 1000 43200 > th dose dependent rect. 11 1
642 308.12 wind 7 270 < th dose independent rect. 10 11
644 308.12 atmosphere 1015 43200 < th dose dependent rect. 23 1
649 308.12 atmosphere 1015 43200 < th dose dependent rect. 23 5
662 308.14 wind 9 1440 > th dose independent rect. 9 4
701 308.16 wind 9 10 < th dose dependent rect. 3 23
715 308.18 wind 9 270 > th dose independent no NA NA
716 308.18 wind 9 270 > th dose independent rect. 9 17
731 308.18 wind 9 270 > th dose independent rect. 1 22
756 308.19 atmosphere 1015 43200 < th dose dependent rect. 11 1
801 308.23 wind 9 270 > th dose independent rect. 9 14
837 308.24 atmosphere 1015 43200 < th dose dependent rect. 5 1
855 308.26 wind 9 1440 < th dose independent rect. 4 8
887 308.28 temperature 25 270 < th dose independent rect. 23 6
943 308.31 atmosphere 1015 43200 < th dose dependent rect. 23 13