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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0762600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NLI interacting factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5 (0.0301) R2 : 0.472
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.13 (0.0784) R2dC : 0.247 R2C : 0.173
β3 : -1.15 (0.078) R2dE : 0.267 R2E : 0.17
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.336 (0.0633) R2dN8 : 0.0444 R2N8 : 0.0253
σ : 0.563
deviance : 146.33
__
_____
C
peak time of C : 19.3
E
wheather : radiation
threshold : 36.17
memory length : 105
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.88 0.548 4.99 0.549 1.14 -1.19 1.15 -0.119 -0.297 19.2 40.03 101 -- --
135.89 0.543 4.99 0.551 1.13 -1.18 1.12 -- -0.296 19.2 40 105 -- --
139.06 0.549 4.99 0.524 1.14 -1.19 -- 0.201 -0.299 19.4 36.6 105 -- --
139.18 0.549 4.99 0.524 1.14 -1.22 -- -- -0.296 19.3 39.86 105 -- --
157.65 0.585 4.96 0.628 -- -1.56 -- 0.304 -0.286 -- 9.983 586 -- --
159.99 0.593 4.97 0.567 1.37 -- 0.985 -- -0.216 16.7 -- -- -- --
162.52 0.597 4.96 0.573 1.37 -- -- -- -0.211 16.6 -- -- -- --
156.6 0.583 4.96 0.57 -- -1.55 -- -- -0.291 -- 8.888 586 -- --
146.33 0.563 5 -- 1.13 -1.15 -- -- -0.336 19.3 36.17 105 -- --
262.62 0.757 4.95 0.52 -- -- -- -- -0.247 -- -- -- -- --
171.18 0.612 4.98 -- 1.36 -- -- -- -0.274 16.6 -- -- -- --
164.4 0.597 4.97 -- -- -1.54 -- -- -0.354 -- 6.57 596 -- --
269.76 0.767 4.96 -- -- -- -- -- -0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.53 radiation 40 270 < th dose dependent rect. 1 12
18 132.13 radiation 40 90 < th dose dependent rect. 3 11
21 132.22 radiation 30 270 < th dose dependent sin 7 NA
22 132.30 radiation 20 90 < th dose independent rect. 3 20
27 132.49 radiation 40 90 < th dose dependent rect. 3 20
33 132.83 radiation 10 10 < th dose independent rect. 4 19
34 132.84 radiation 30 10 < th dose dependent rect. 4 19
35 132.86 radiation 10 270 < th dose independent rect. 1 13
41 133.04 radiation 20 90 < th dose independent rect. 1 22
49 133.30 radiation 40 90 < th dose dependent rect. 1 22
55 133.46 radiation 1 270 > th dose dependent sin 7 NA
64 133.68 radiation 10 270 < th dose independent rect. 1 10
66 133.72 radiation 10 270 < th dose independent rect. 1 18
78 133.96 radiation 40 10 < th dose dependent rect. 9 23
87 134.13 radiation 20 270 < th dose independent rect. 1 16
88 134.13 radiation 40 90 < th dose dependent rect. 3 16
121 134.55 radiation 40 90 < th dose dependent rect. 9 23
132 134.77 radiation 40 90 < th dose dependent sin 3 NA
141 134.94 radiation 1 90 > th dose dependent sin 3 NA
142 134.97 radiation 10 270 > th dose independent sin 6 NA
146 134.99 radiation 40 90 < th dose dependent rect. 11 23
149 135.07 radiation 20 90 < th dose independent rect. 3 16
162 135.25 radiation 20 90 < th dose independent rect. 3 12
198 135.55 radiation 40 270 < th dose independent rect. 9 22
199 135.55 radiation 40 10 < th dose dependent rect. 11 23
239 135.94 radiation 20 90 < th dose independent rect. 9 23
244 136.01 radiation 20 10 < th dose independent rect. 9 23
252 136.08 radiation 40 10 < th dose dependent rect. 4 15
255 136.10 radiation 40 90 < th dose dependent rect. 15 23
256 136.11 radiation 40 90 < th dose dependent no NA NA
257 136.11 radiation 1 90 > th dose dependent rect. 6 11
334 136.55 radiation 10 270 > th dose independent rect. 17 21
339 136.58 wind 7 270 < th dose independent rect. 5 22
372 136.66 wind 5 270 < th dose independent rect. 6 8
375 136.67 radiation 1 90 > th dose dependent no NA NA
440 136.75 radiation 1 90 > th dose dependent rect. 13 23
446 136.77 radiation 30 10 < th dose dependent rect. 1 23
458 136.86 wind 9 270 < th dose dependent rect. 6 8
486 137.02 radiation 10 270 < th dose independent sin 5 NA
489 137.03 radiation 40 10 < th dose dependent rect. 3 11
501 137.09 radiation 40 10 < th dose dependent rect. 13 23
510 137.16 radiation 30 10 < th dose dependent no NA NA
512 137.17 radiation 10 270 > th dose independent rect. 6 8
531 137.22 radiation 1 270 > th dose dependent rect. 6 5
535 137.24 radiation 1 270 > th dose dependent rect. 16 21
544 137.29 radiation 30 10 < th dose dependent rect. 15 23
548 137.31 wind 9 270 < th dose dependent rect. 6 19
554 137.36 wind 7 270 < th dose independent rect. 6 19
556 137.36 radiation 1 90 > th dose dependent rect. 15 23
621 137.51 radiation 10 90 > th dose independent sin 2 NA
632 137.56 radiation 40 90 < th dose dependent rect. 13 23
640 137.58 radiation 20 10 < th dose independent rect. 10 13
745 138.00 radiation 20 90 < th dose independent rect. 11 23
764 138.08 radiation 10 90 < th dose independent sin 0 NA
770 138.11 radiation 30 10 < th dose dependent rect. 3 23
771 138.12 radiation 40 270 < th dose independent rect. 11 19
787 138.25 radiation 20 90 < th dose independent no NA NA
792 138.26 radiation 40 10 < th dose dependent rect. 11 21
804 138.33 radiation 20 90 < th dose independent rect. 15 23
886 138.54 wind 9 270 < th dose dependent rect. 5 21
888 138.55 radiation 10 10 < th dose independent rect. 4 11
989 138.85 radiation 40 10 < th dose dependent rect. 11 12
999 138.89 radiation 1 10 > th dose dependent rect. 6 13