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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0761500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.02 (0.0513) R2 : 0.603
β1 : -3.41 (0.293) R2dD : 0.458 R2D : -0.338
β2 : 2.12 (0.101) R2dC : 0.387 R2C : 0.297
β3 : 2.2 (0.145) R2dE : 0.281 R2E : -0.00711
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.69 (0.799) R2dD*E : 0.297 R2D*E : -0.246
γ1 : -0.61 (0.117) R2dN8 : 0.0559 R2N8 : -0.121
σ : 0.772
deviance : 274.69
__
_____
C
peak time of C : 14.3
E
wheather : temperature
threshold : 20.6
memory length : 1442
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.68 0.779 6.01 -3.35 2.12 2.2 0.166 -7.51 -0.597 14.3 20.38 1448 -- --
305.56 0.814 5.8 -1.75 2.14 2.47 0.0676 -- -0.291 14.2 13.26 7274 -- --
274.69 0.772 6.02 -3.41 2.12 2.2 -- -7.69 -0.61 14.3 20.6 1442 -- --
303.03 0.811 5.78 -1.75 2.1 2.75 -- -- -0.152 14.3 10.87 5819 -- --
354.64 0.882 5.88 -1.96 -- 3.85 -- -4.7 -0.385 -- 20.13 5 -- --
426.34 0.968 5.64 -0.415 2.02 -- 0.345 -- 0.461 14.3 -- -- -- --
426.78 0.967 5.64 -0.406 2.02 -- -- -- 0.463 14.3 -- -- -- --
371.33 0.897 5.79 -1.32 -- 4.53 -- -- -0.194 -- 13.96 3 -- --
348.31 0.869 5.68 -- 2.28 2.34 -- -- 0.237 13.5 13.05 843 -- --
668.09 1.21 5.66 -0.491 -- -- -- -- 0.413 -- -- -- -- --
431.11 0.971 5.63 -- 2.02 -- -- -- 0.508 14.3 -- -- -- --
414.17 0.948 5.75 -- -- 4.14 -- -- -0.00386 -- 12.64 9 -- --
674.45 1.21 5.64 -- -- -- -- -- 0.468 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 247.06 wind 5 43200 > th dose independent rect. 14 8
9 247.78 wind 5 43200 < th dose independent rect. 13 12
25 248.50 wind 5 43200 > th dose dependent rect. 15 1
41 249.28 wind 5 43200 < th dose independent sin 18 NA
50 249.52 wind 5 43200 > th dose independent sin 18 NA
60 250.30 wind 3 43200 > th dose dependent rect. 13 10
66 250.45 wind 3 43200 > th dose dependent rect. 12 13
97 251.43 wind 3 43200 > th dose dependent sin 19 NA
126 252.15 wind 7 43200 < th dose independent rect. 15 1
159 253.44 wind 5 43200 < th dose independent rect. 11 6
184 254.08 wind 5 43200 > th dose independent rect. 15 1
252 255.56 wind 5 43200 > th dose dependent rect. 15 4
280 256.08 wind 9 43200 < th dose dependent rect. 11 12
307 256.78 wind 9 43200 > th dose independent rect. 18 3
321 257.12 wind 3 43200 > th dose dependent rect. 12 4
343 257.58 wind 9 43200 > th dose dependent rect. 18 3
392 258.46 atmosphere 1005 43200 > th dose independent rect. 14 1
400 258.53 wind 9 43200 < th dose independent rect. 18 3
461 259.48 wind 9 43200 < th dose dependent rect. 11 5
483 259.89 wind 9 43200 < th dose dependent sin 20 NA
488 259.93 wind 1 43200 > th dose dependent rect. 20 1
515 260.17 wind 5 43200 < th dose dependent rect. 20 1
530 260.38 wind 9 43200 < th dose dependent rect. 9 9
545 260.54 radiation 1 43200 > th dose independent rect. 18 1
572 260.80 wind 9 43200 > th dose dependent rect. 18 5
577 260.84 radiation 20 14400 < th dose dependent rect. 3 2
666 261.86 atmosphere 1005 43200 < th dose independent rect. 14 1
741 262.69 radiation 1 43200 < th dose independent rect. 18 4
745 262.70 radiation 1 43200 < th dose independent rect. 18 6
757 262.77 radiation 1 43200 < th dose independent rect. 18 2
762 262.80 humidity 90 43200 < th dose independent rect. 19 2
764 262.80 wind 9 43200 > th dose dependent rect. 18 7
772 262.86 radiation 1 43200 < th dose independent rect. 18 10
790 263.03 wind 9 43200 > th dose dependent rect. 18 12
891 263.90 radiation 1 43200 < th dose dependent rect. 18 4
894 263.92 radiation 1 43200 < th dose dependent rect. 18 2
920 264.01 radiation 1 43200 < th dose dependent rect. 18 10
937 264.16 wind 3 43200 > th dose independent rect. 20 1