Os01g0761400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os01g0761400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.59 | 0.487 | 3.23 | -0.542 | 0.456 | 0.875 | -0.344 | -0.661 | -0.119 | 11.2 | 55.65 | 52 | -- | -- |
| 106.93 | 0.482 | 3.23 | -0.524 | 0.447 | 1.18 | -0.414 | -- | -0.127 | 11.2 | 56.28 | 79 | -- | -- |
| 107.07 | 0.486 | 3.23 | -0.572 | 0.468 | 1.38 | -- | -1.77 | -0.126 | 11.2 | 56.03 | 79 | -- | -- |
| 107.48 | 0.483 | 3.23 | -0.547 | 0.443 | 1.27 | -- | -- | -0.118 | 11.2 | 56.25 | 85 | -- | -- |
| 118.96 | 0.508 | 3.23 | -0.538 | -- | 1.27 | -- | -0.757 | -0.108 | -- | 54.67 | 79 | -- | -- |
| 114.98 | 0.503 | 3.24 | -0.634 | 0.542 | -- | -0.637 | -- | -0.164 | 11.3 | -- | -- | -- | -- |
| 116.73 | 0.506 | 3.24 | -0.66 | 0.545 | -- | -- | -- | -0.167 | 11.4 | -- | -- | -- | -- |
| 118.87 | 0.508 | 3.24 | -0.529 | -- | 1.57 | -- | -- | -0.109 | -- | 55.46 | 79 | -- | -- |
| 115.1 | 0.5 | 3.22 | -- | 0.442 | 1.47 | -- | -- | -0.0566 | 11.2 | 56.29 | 85 | -- | -- |
| 135.36 | 0.544 | 3.25 | -0.674 | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
| 128.22 | 0.53 | 3.22 | -- | 0.552 | -- | -- | -- | -0.0931 | 11.4 | -- | -- | -- | -- |
| 125.83 | 0.522 | 3.22 | -- | -- | 1.77 | -- | -- | -0.0435 | -- | 55.66 | 85 | -- | -- |
| 147.35 | 0.567 | 3.24 | -- | -- | -- | -- | -- | -0.0973 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.52 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 2 |
| 9 | 104.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 35 | 105.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 36 | 105.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 50 | 106.13 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 53 | 106.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 66 | 106.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 92 | 106.70 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 102 | 106.78 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 113 | 106.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 117 | 106.85 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 6 |
| 127 | 106.91 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 3 | 23 |
| 156 | 107.07 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 162 | 107.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 164 | 107.12 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 197 | 107.33 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 207 | 107.38 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 1 |
| 208 | 107.38 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 214 | 107.38 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 215 | 107.38 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 240 | 107.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 251 | 107.48 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 266 | 107.52 | radiation | 40 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 272 | 107.54 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 292 | 107.60 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 302 | 107.64 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 338 | 107.74 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 9 |
| 348 | 107.76 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 369 | 107.81 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 16 | 20 |
| 395 | 107.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 399 | 107.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 429 | 107.96 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 0 | NA |
| 444 | 107.98 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 10 |
| 483 | 108.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 515 | 108.09 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 519 | 108.10 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 545 | 108.14 | humidity | 50 | 10 | > th | dose independent | rect. | 3 | 23 |
| 550 | 108.15 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 3 | 13 |
| 612 | 108.24 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 12 |
| 624 | 108.26 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 643 | 108.29 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 646 | 108.29 | humidity | 90 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 662 | 108.31 | radiation | 40 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 695 | 108.36 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 3 | 12 |
| 697 | 108.36 | humidity | 60 | 270 | < th | dose dependent | rect. | 10 | 1 |
| 705 | 108.38 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 12 | 23 |
| 717 | 108.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 5 | 18 |
| 742 | 108.43 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 16 |
| 746 | 108.44 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 14 |
| 751 | 108.45 | humidity | 70 | 30 | < th | dose independent | rect. | 11 | 1 |
| 755 | 108.45 | radiation | 40 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 786 | 108.47 | temperature | 30 | 30 | < th | dose independent | rect. | 22 | 14 |
| 812 | 108.51 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 824 | 108.53 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 834 | 108.54 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 3 | 17 |
| 848 | 108.56 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 852 | 108.56 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 853 | 108.57 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 915 | 108.64 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 924 | 108.65 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 957 | 108.69 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 968 | 108.70 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 973 | 108.71 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 981 | 108.72 | temperature | 30 | 30 | < th | dose independent | rect. | 20 | 16 |
| 990 | 108.72 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 993 | 108.73 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 6 |