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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0760300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pollen-specific kinase partner protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0513) R2 : 0.271
β1 : 0.715 (0.187) R2dD : 0.0254 R2D : 0.0185
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.62 (0.187) R2dE : 0.153 R2E : 0.0308
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.74 (0.798) R2dD*E : 0.193 R2D*E : 0.0883
γ1 : -0.18 (0.112) R2dN8 : 0.00607 R2N8 : 0.00797
σ : 0.93
deviance : 398.96
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.581
memory length : 4175
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.1
open length of G : 2.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
396.99 0.936 3.35 0.613 0.133 1.44 1.13 7.3 -0.185 16.7 5.511 4167 19.9 2.2
475.35 1.02 3.29 1.05 0.141 1.2 0.419 -- -0.0256 16 5.538 5600 19.9 0.661
397.75 0.929 3.35 0.674 0.188 1.54 -- 7.4 -0.159 15 5.567 4176 20 2.21
444.02 0.981 3.26 0.899 0.177 1.63 -- -- 0.0602 15.7 7.811 10777 20.2 0.732
398.96 0.93 3.36 0.715 -- 1.62 -- 7.74 -0.18 -- 5.581 4175 20.1 2.3
525.07 1.07 3.3 0.675 0.144 -- 0.63 -- -0.239 15.7 -- -- -- --
525.85 1.07 3.3 0.685 0.163 -- -- -- -0.235 13.7 -- -- -- --
440.2 0.977 3.26 0.8 -- 1.91 -- -- 0.0446 -- 7.999 10859 20.2 0.816
438.83 0.976 3.28 -- 0.124 2.01 -- -- -0.0884 13.6 8 10898 20.2 0.25
527.46 1.07 3.3 0.678 -- -- -- -- -0.239 -- -- -- -- --
538.2 1.09 3.32 -- 0.15 -- -- -- -0.311 13.5 -- -- -- --
439.97 0.977 3.28 -- -- 2.01 -- -- -0.0884 -- 8 10898 20.2 0.25
539.59 1.08 3.32 -- -- -- -- -- -0.314 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 403.21 wind 5 4320 > th dose dependent rect. 20 3
7 407.30 wind 5 4320 > th dose independent rect. 20 2
9 408.06 wind 7 4320 < th dose independent rect. 18 7
18 410.43 wind 7 4320 < th dose independent rect. 18 4
19 410.45 wind 7 4320 > th dose independent rect. 18 7
23 411.20 wind 7 4320 > th dose independent rect. 18 4
27 412.23 wind 5 4320 < th dose independent rect. 20 2
128 421.43 humidity 90 1440 < th dose dependent rect. 3 1
158 423.90 humidity 80 1440 < th dose independent rect. 22 1
178 425.98 humidity 90 1440 < th dose dependent rect. 2 5
194 428.85 humidity 50 1440 > th dose dependent rect. 2 1
196 428.95 atmosphere 995 14400 < th dose independent rect. 18 1
199 428.95 atmosphere 995 14400 < th dose dependent rect. 18 1
221 429.26 atmosphere 995 14400 > th dose independent rect. 17 2
222 429.26 wind 5 1440 > th dose independent rect. 17 23
238 429.92 wind 5 1440 > th dose independent rect. 7 20
243 430.06 atmosphere 1005 14400 < th dose independent rect. 24 1
250 430.23 wind 5 1440 < th dose independent rect. 7 20
252 430.26 wind 5 1440 < th dose independent rect. 17 23
253 430.30 atmosphere 995 14400 > th dose independent rect. 13 6
255 430.31 atmosphere 995 14400 > th dose independent rect. 7 12
278 430.55 wind 5 1440 > th dose independent rect. 20 20
282 430.60 humidity 50 1440 > th dose dependent rect. 1 3
333 430.95 atmosphere 995 14400 > th dose independent rect. 13 2
383 431.40 wind 5 1440 > th dose independent rect. 11 23
391 431.47 wind 5 1440 > th dose independent rect. 15 23
412 431.71 atmosphere 1005 14400 > th dose independent rect. 23 5
415 431.74 wind 5 1440 < th dose independent rect. 20 20
448 432.08 atmosphere 1005 14400 > th dose independent rect. 3 1
488 432.30 humidity 70 1440 > th dose dependent rect. 1 6
496 432.37 wind 5 1440 > th dose independent rect. 20 23
512 432.43 wind 5 1440 < th dose independent rect. 11 23
534 432.70 wind 5 1440 > th dose independent no NA NA
546 432.81 humidity 70 1440 > th dose dependent rect. 24 8
569 432.96 atmosphere 995 14400 > th dose independent sin 22 NA
581 433.05 humidity 80 1440 > th dose independent rect. 22 3
582 433.05 atmosphere 995 14400 > th dose independent rect. 18 22
592 433.18 humidity 50 1440 > th dose dependent rect. 24 8
595 433.20 atmosphere 1005 14400 < th dose independent rect. 3 1
618 433.31 atmosphere 995 14400 < th dose independent sin 22 NA
637 433.37 wind 5 1440 > th dose independent rect. 2 23
667 433.58 wind 5 1440 > th dose independent rect. 24 23
674 433.63 atmosphere 995 14400 < th dose independent rect. 18 22
678 433.65 wind 5 1440 < th dose independent no NA NA
753 434.12 wind 5 1440 > th dose independent rect. 22 23
784 434.29 wind 5 1440 < th dose independent rect. 2 23
839 434.48 atmosphere 995 14400 < th dose dependent sin 22 NA
887 434.68 wind 5 1440 < th dose independent rect. 22 23
888 434.68 wind 5 1440 < th dose independent rect. 24 23
949 434.89 wind 5 4320 > th dose independent sin 14 NA
964 434.92 wind 5 1440 > th dose dependent rect. 17 17
997 435.00 atmosphere 995 14400 > th dose independent rect. 14 23