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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0759200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PnC401 homologue.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.76 (0.0457) R2 : 0.457
β1 : 1.34 (0.172) R2dD : 0.0889 R2D : 0.00552
β2 : 1.41 (0.116) R2dC : 0.17 R2C : 0.233
β3 : 3.15 (0.308) R2dE : 0.141 R2E : 0.188
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.52 (0.982) R2dD*E : 0.0562 R2D*E : 0.0295
γ1 : 0.0658 (0.0997) R2dN8 : -0.00133 R2N8 : 0.00156
σ : 0.839
deviance : 324.2
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_____
C
peak time of C : 8.43
E
wheather : humidity
threshold : 123.4
memory length : 1460
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.86
open length of G : 2.12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.34 0.857 3.75 1.13 1.51 2.73 0.624 6.36 0.077 8.26 92 1474 4.9 2.02
349.87 0.871 3.75 1.11 1.47 3.69 0.155 -- 0.0375 8.83 131.3 1462 4.79 2
324.2 0.839 3.76 1.34 1.41 3.15 -- 6.52 0.0658 8.43 123.4 1460 4.86 2.12
346.64 0.867 3.75 1.07 1.24 3.86 -- -- -0.0515 8.73 124.9 1467 4.72 2.02
403.33 0.935 3.84 1.4 -- 3.98 -- 6.4 -0.14 -- 137.7 1467 4.62 2.36
435.85 0.979 3.68 0.747 1.61 -- 0.731 -- 0.189 8.1 -- -- -- --
437.46 0.979 3.68 0.768 1.61 -- -- -- 0.188 8.08 -- -- -- --
422.72 0.958 3.8 1.05 -- 4.39 -- -- -0.119 -- 133.1 1475 4.63 2.15
374.44 0.901 3.78 -- 1.23 3.37 -- -- -0.199 8.82 138.2 1463 4.68 2.18
579.24 1.12 3.73 0.782 -- -- -- -- 0.208 -- -- -- -- --
452.99 0.996 3.7 -- 1.61 -- -- -- 0.102 8.04 -- -- -- --
448.88 0.987 3.83 -- -- 4.08 -- -- -0.248 -- 138 1476 4.55 2.29
595.38 1.14 3.74 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.94 humidity 90 1440 < th dose dependent rect. 5 2
2 342.07 humidity 70 1440 > th dose dependent rect. 5 2
6 344.40 humidity 90 1440 < th dose dependent rect. 3 4
9 346.86 humidity 90 1440 < th dose dependent rect. 24 8
11 347.00 wind 7 1440 > th dose independent rect. 8 1
13 347.16 humidity 70 1440 > th dose dependent rect. 24 8
14 347.17 humidity 50 1440 > th dose dependent rect. 24 8
20 347.43 radiation 20 1440 > th dose independent rect. 6 1
40 348.99 temperature 20 720 < th dose independent rect. 18 1
60 350.63 temperature 20 720 < th dose independent rect. 10 10
64 350.74 humidity 80 1440 > th dose independent rect. 6 1
66 350.88 wind 7 1440 < th dose independent rect. 8 1
67 350.89 atmosphere 995 14400 > th dose independent rect. 18 3
82 351.57 wind 9 4320 > th dose dependent rect. 20 1
85 351.63 wind 7 4320 < th dose independent rect. 19 2
86 351.75 humidity 90 1440 < th dose dependent rect. 3 1
91 352.07 atmosphere 995 14400 > th dose independent rect. 18 1
101 352.44 wind 9 4320 > th dose dependent rect. 19 7
107 352.49 wind 9 4320 > th dose independent rect. 19 2
125 353.20 wind 9 4320 < th dose independent rect. 20 7
129 353.40 wind 7 1440 > th dose independent rect. 1 8
138 353.89 wind 9 4320 > th dose independent rect. 19 7
171 355.06 atmosphere 995 14400 < th dose independent rect. 18 1
174 355.06 atmosphere 995 14400 < th dose dependent rect. 18 1
221 355.97 humidity 90 1440 < th dose independent rect. 5 2
284 358.14 humidity 90 1440 < th dose independent rect. 24 18
311 359.29 humidity 90 1440 < th dose independent rect. 24 8
398 360.71 atmosphere 995 14400 > th dose independent rect. 7 14
405 360.83 atmosphere 995 14400 > th dose independent rect. 7 12
408 360.90 humidity 80 10 < th dose independent rect. 20 11
433 361.13 atmosphere 995 14400 > th dose independent rect. 11 10
454 361.56 wind 5 1440 > th dose dependent rect. 8 1
493 362.20 humidity 80 1440 > th dose dependent rect. 23 17
506 362.50 temperature 20 1440 > th dose independent rect. 18 1
510 362.58 wind 7 1440 < th dose independent rect. 1 8
554 362.83 radiation 1 14400 < th dose dependent rect. 23 5
587 363.46 humidity 80 1440 < th dose independent rect. 22 1
594 363.53 humidity 80 1440 > th dose dependent sin 8 NA
596 363.56 atmosphere 995 14400 > th dose independent rect. 10 4
603 363.67 atmosphere 995 14400 > th dose independent rect. 12 2
625 363.93 wind 5 1440 > th dose independent rect. 7 16
634 364.09 humidity 50 1440 > th dose dependent rect. 3 1
653 364.31 radiation 1 14400 < th dose dependent rect. 1 3
675 364.43 humidity 80 10 < th dose dependent rect. 20 11
711 364.79 atmosphere 995 14400 < th dose independent sin 22 NA
713 364.84 atmosphere 995 14400 > th dose independent sin 22 NA
731 364.93 humidity 70 1440 > th dose dependent rect. 24 1
761 365.13 wind 5 1440 < th dose independent rect. 7 16
776 365.30 atmosphere 1005 14400 < th dose independent rect. 5 1
781 365.34 humidity 80 720 < th dose dependent rect. 21 2
792 365.45 humidity 90 1440 < th dose dependent rect. 24 1
793 365.46 humidity 90 1440 < th dose independent sin 7 NA
807 365.55 temperature 25 14400 > th dose dependent rect. 24 1
828 365.74 atmosphere 1005 14400 > th dose independent rect. 5 1
851 365.81 atmosphere 995 14400 < th dose dependent sin 22 NA
856 365.85 atmosphere 1005 14400 > th dose independent rect. 14 1
872 365.96 humidity 80 1440 < th dose independent rect. 21 4
948 366.20 atmosphere 1005 14400 > th dose independent rect. 4 13
949 366.21 atmosphere 1005 14400 > th dose independent rect. 5 10
978 366.26 atmosphere 1005 14400 > th dose independent rect. 1 17
980 366.27 atmosphere 995 14400 > th dose independent rect. 18 22