Os01g0758300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate carboxylase, housekeeping isozyme (EC 4.1.1.31) (PEPCase).
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Os01g0758300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoenolpyruvate carboxylase, housekeeping isozyme (EC 4.1.1.31) (PEPCase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.95 | 0.785 | 5.37 | -2.36 | 1.56 | 1.95 | -1.59 | 4.42 | -1.08 | 0.142 | 0.5585 | 4362 | -- | -- |
| 295.59 | 0.801 | 5.29 | -1.68 | 1.11 | 1.62 | -1.52 | -- | -1.03 | 23.6 | 1.504 | 4618 | -- | -- |
| 275.87 | 0.774 | 5.39 | -2.14 | 2.35 | 2.67 | -- | 5.33 | -1.08 | 23.2 | 0.1783 | 3998 | -- | -- |
| 299.7 | 0.806 | 5.29 | -1.56 | 2.18 | 1.95 | -- | -- | -0.925 | 22.6 | 1.378 | 3811 | -- | -- |
| 309.44 | 0.824 | 5.27 | -1.81 | -- | 1.23 | -- | -1.63 | -1.12 | -- | 0.52 | 4609 | -- | -- |
| 310.99 | 0.827 | 5.32 | -2 | 1.64 | -- | -1.47 | -- | -1.17 | 0.11 | -- | -- | -- | -- |
| 320.23 | 0.838 | 5.31 | -1.94 | 1.64 | -- | -- | -- | -1.16 | 0.203 | -- | -- | -- | -- |
| 326.66 | 0.845 | 5.28 | -1.84 | -- | 1.22 | -- | -- | -1.13 | -- | 0.52 | 4609 | -- | -- |
| 351.51 | 0.873 | 5.28 | -- | 2.25 | 2.54 | -- | -- | -0.765 | 22.8 | 0.002948 | 3906 | -- | -- |
| 490.05 | 1.03 | 5.28 | -1.89 | -- | -- | -- | -- | -1.14 | -- | -- | -- | -- | -- |
| 419.6 | 0.958 | 5.26 | -- | 1.62 | -- | -- | -- | -0.946 | 0.138 | -- | -- | -- | -- |
| 415.98 | 0.953 | 5.23 | -- | -- | 1.24 | -- | -- | -0.922 | -- | 0.52 | 4609 | -- | -- |
| 584.09 | 1.13 | 5.23 | -- | -- | -- | -- | -- | -0.928 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.42 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 5 | 257.87 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 8 | 258.03 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 10 | 258.27 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 14 | 259.05 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 18 | 259.58 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 24 | 260.33 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 25 | 260.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 28 | 261.51 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 38 | 261.89 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 56 | 262.67 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 68 | 263.53 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 81 | 264.26 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 82 | 264.31 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 84 | 264.44 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 85 | 264.44 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 88 | 264.56 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 89 | 264.59 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 92 | 264.64 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 95 | 264.66 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 127 | 264.85 | temperature | 15.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 132 | 264.87 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 142 | 264.91 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 154 | 264.95 | temperature | 15.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 155 | 264.96 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 168 | 264.99 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 206 | 265.09 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 250 | 265.18 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 271 | 265.24 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 321 | 265.35 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 334 | 265.38 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 401 | 265.50 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 409 | 265.51 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 411 | 265.51 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 418 | 265.54 | temperature | 15.0 | 43200 | > th | dose independent | no | NA | NA |
| 450 | 265.58 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 489 | 265.64 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 496 | 265.64 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 507 | 265.66 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 517 | 265.68 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 538 | 265.71 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 546 | 265.72 | temperature | 15.0 | 43200 | < th | dose independent | no | NA | NA |
| 668 | 265.89 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 669 | 265.90 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 778 | 266.21 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 853 | 266.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 857 | 266.56 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 938 | 267.18 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 996 | 267.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 998 | 267.67 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 13 | 1 |