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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0756900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.55 (0.102) R2 : 0.399
β1 : -8.82 (0.668) R2dD : 1.73 R2D : -0.613
β2 : 0.683 (0.162) R2dC : 0.0238 R2C : -0.121
β3 : 4.02 (0.377) R2dE : 0.453 R2E : -0.474
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23.7 (2.75) R2dD*E : 0.792 R2D*E : -1.27
γ1 : -0.727 (0.183) R2dN8 : 0.0438 R2N8 : -0.158
σ : 1.27
deviance : 740.49
__
_____
C
peak time of C : 11.1
E
wheather : temperature
threshold : 26.27
memory length : 4243
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
738.56 1.28 5.55 -8.88 0.68 4.04 -0.716 -23.8 -0.749 11.1 26.17 4254 -- --
874.48 1.39 4.97 -3.59 0.564 2.53 0.309 -- -0.118 5.46 8.339 47520 -- --
740.49 1.27 5.55 -8.82 0.683 4.02 -- -23.7 -0.727 11.1 26.27 4243 -- --
865.44 1.37 5.12 -5.52 0.75 2.64 -- -- -0.596 11.2 9.452 29428 -- --
768.56 1.29 5.55 -8.76 -- 3.93 -- -23.3 -0.737 -- 26.32 4300 -- --
931.15 1.43 4.89 -3.06 0.546 -- -0.668 -- 0.242 11 -- -- -- --
933.03 1.43 4.89 -3.09 0.549 -- -- -- 0.24 11 -- -- -- --
852.38 1.36 5.07 -4.43 -- 2.47 -- -- -0.502 -- 11.4 8726 -- --
1081.57 1.53 4.7 -- 0.529 -1.63 -- -- 1.07 11.1 4.028 47520 -- --
951.78 1.44 4.9 -3.1 -- -- -- -- 0.236 -- -- -- -- --
1184.44 1.61 4.81 -- 0.579 -- -- -- 0.584 11.4 -- -- -- --
878.33 1.38 4.88 -- -- -2.3 -- -- 0.614 -- 34.86 47520 -- --
1205.43 1.62 4.83 -- -- -- -- -- 0.58 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 707.20 radiation 40 43200 > th dose dependent rect. 9 1
4 709.61 radiation 40 43200 > th dose dependent rect. 7 4
21 709.68 radiation 40 43200 < th dose independent rect. 8 3
41 709.82 radiation 40 43200 < th dose independent rect. 1 10
42 709.82 radiation 40 43200 < th dose independent rect. 23 12
44 709.82 radiation 40 43200 < th dose independent rect. 18 17
45 709.83 radiation 40 43200 < th dose independent rect. 3 8
50 709.85 radiation 40 43200 < th dose independent rect. 5 6
55 709.90 radiation 40 43200 > th dose independent rect. 9 2
72 709.92 radiation 40 43200 > th dose dependent sin 10 NA
112 710.48 wind 3 43200 > th dose dependent rect. 13 1
130 710.55 radiation 20 43200 < th dose independent rect. 2 7
132 710.55 radiation 20 43200 < th dose independent rect. 23 10
134 710.55 radiation 20 43200 < th dose independent rect. 18 15
140 710.58 radiation 20 43200 < th dose independent rect. 5 4
144 710.63 radiation 40 43200 < th dose independent sin 9 NA
165 711.02 radiation 40 43200 > th dose independent rect. 7 4
226 711.60 radiation 20 43200 > th dose independent rect. 6 2
264 712.36 radiation 10 43200 > th dose dependent rect. 6 1
450 714.75 radiation 20 43200 < th dose independent sin 10 NA
451 714.77 wind 5 43200 > th dose dependent rect. 13 3
576 715.75 wind 5 43200 > th dose independent rect. 12 3
598 715.85 radiation 40 43200 < th dose independent rect. 7 13
601 715.85 radiation 40 43200 < th dose independent rect. 7 17
605 715.85 radiation 40 43200 < th dose independent rect. 3 21
606 715.85 radiation 40 43200 < th dose independent rect. 7 21
640 715.86 radiation 40 43200 < th dose independent rect. 23 21
644 715.86 radiation 40 43200 < th dose independent rect. 5 23
649 715.87 radiation 40 43200 < th dose independent no NA NA
652 715.87 radiation 40 43200 < th dose independent rect. 5 14
737 715.99 radiation 40 43200 > th dose dependent no NA NA
876 716.02 radiation 40 43200 > th dose independent sin 10 NA
965 717.12 wind 5 43200 < th dose independent rect. 12 3