Os01g0756600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF642 family protein.
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Os01g0756600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF642 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 280.28 | 0.787 | 9.62 | -3.93 | 1.28 | 2.24 | 0.633 | -6.04 | -0.936 | 23 | 26.46 | 1221 | -- | -- |
| 289.13 | 0.792 | 9.47 | -2.6 | 1.2 | 1.64 | 0.433 | -- | -0.766 | 23.2 | 25.8 | 1165 | -- | -- |
| 281.81 | 0.782 | 9.61 | -3.89 | 1.27 | 2.24 | -- | -5.9 | -0.892 | 22.9 | 26.68 | 1216 | -- | -- |
| 288.9 | 0.792 | 9.46 | -2.58 | 1.24 | 1.69 | -- | -- | -0.725 | 22.9 | 25.98 | 1176 | -- | -- |
| 343.52 | 0.863 | 9.59 | -3.71 | -- | 2.91 | -- | -4.89 | -1.11 | -- | 24.5 | 979 | -- | -- |
| 389.4 | 0.925 | 9.44 | -2.02 | 1.55 | -- | 0.812 | -- | -0.589 | 23.3 | -- | -- | -- | -- |
| 392.18 | 0.927 | 9.44 | -2.06 | 1.54 | -- | -- | -- | -0.592 | 23.2 | -- | -- | -- | -- |
| 355.56 | 0.878 | 9.46 | -2.69 | -- | 2.47 | -- | -- | -0.859 | -- | 24.43 | 976 | -- | -- |
| 445.56 | 0.983 | 9.35 | -- | 1.35 | 1.11 | -- | -- | -0.211 | 22.9 | 28.6 | 1186 | -- | -- |
| 540.93 | 1.09 | 9.4 | -2.02 | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
| 503.54 | 1.05 | 9.39 | -- | 1.52 | -- | -- | -- | -0.363 | 23.1 | -- | -- | -- | -- |
| 533.57 | 1.08 | 9.38 | -- | -- | 1.9 | -- | -- | -0.473 | -- | 24.9 | 959 | -- | -- |
| 648.32 | 1.19 | 9.35 | -- | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 17 | 280.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 48 | 281.57 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 63 | 281.72 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 70 | 281.78 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 72 | 281.79 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 78 | 281.91 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 98 | 282.10 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 21 |
| 102 | 282.13 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 118 | 282.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 145 | 282.33 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 156 | 282.39 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 177 | 282.46 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 210 | 282.57 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 225 | 282.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 229 | 282.62 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 233 | 282.64 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 243 | 282.66 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 258 | 282.71 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 261 | 282.72 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 266 | 282.75 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 268 | 282.76 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 294 | 282.86 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 335 | 283.02 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 467 | 283.58 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 475 | 283.64 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 505 | 283.77 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 530 | 283.89 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 540 | 283.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 568 | 284.15 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 639 | 284.51 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 669 | 284.66 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 705 | 284.85 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 729 | 284.95 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 765 | 285.20 | wind | 7 | 43200 | < th | dose independent | sin | 16 | NA |
| 808 | 285.42 | wind | 7 | 43200 | > th | dose independent | sin | 16 | NA |
| 921 | 286.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |