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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0756300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.97 (0.0789) R2 : 0.4
β1 : -0.829 (0.296) R2dD : 0.0114 R2D : 0.023
β2 : 1.9 (0.185) R2dC : 0.139 R2C : 0.163
β3 : 2.72 (0.243) R2dE : 0.2 R2E : 0.202
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.56 (0.909) R2dD*E : 0.023 R2D*E : 0.0428
γ1 : 0.445 (0.183) R2dN8 : 0.0133 R2N8 : -0.0253
σ : 1.43
deviance : 938.9
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_____
C
peak time of C : 1.68
E
wheather : radiation
threshold : 18.16
memory length : 1299
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.8
open length of G : 5.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
928.08 1.43 3.98 -0.881 1.93 2.63 -1.88 -3.35 0.442 1.86 18.15 1310 10.7 5.42
951.53 1.44 4 -1.12 1.95 2.76 -1.85 -- 0.333 1.75 18.16 1304 10.8 5.85
938.9 1.43 3.97 -0.829 1.9 2.72 -- -3.56 0.445 1.68 18.16 1299 10.8 5.63
968.28 1.45 4 -1.15 1.95 2.79 -- -- 0.323 1.64 18.16 1309 10.8 5.86
1049.88 1.51 4.05 -1.16 -- 3.71 -- -3.27 0.183 -- 25.48 1181 11.6 6.09
1202.71 1.63 4.22 -1.63 2.11 -- -2.55 -- -0.555 1.66 -- -- -- --
1227.99 1.64 4.21 -1.55 2.1 -- -- -- -0.539 1.49 -- -- -- --
1055.84 1.51 4.05 -1.14 -- 4.01 -- -- 0.104 -- 25.15 1138 11.6 7.27
997.11 1.47 4.01 -- 1.93 2.91 -- -- 0.408 1.73 16.13 1282 10.6 6.17
1499.75 1.81 4.18 -1.46 -- -- -- -- -0.493 -- -- -- -- --
1291.2 1.68 4.17 -- 2.08 -- -- -- -0.366 1.47 -- -- -- --
1068.62 1.52 3.99 -- -- 4.5 -- -- 0.374 -- 24.2 1134 10.6 8.42
1556.34 1.84 4.15 -- -- -- -- -- -0.331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 936.00 wind 1.0 43200 > th dose independent rect. 2 2
2 937.38 wind 1.0 43200 < th dose independent rect. 2 2
3 939.85 wind 9.0 43200 > th dose dependent rect. 15 2
4 940.85 temperature 20.0 43200 > th dose independent rect. 7 2
6 941.05 temperature 20.0 43200 > th dose independent rect. 6 4
11 942.12 temperature 20.0 43200 < th dose independent rect. 7 2
12 942.13 temperature 20.0 43200 < th dose independent rect. 6 4
17 942.73 wind 1.0 43200 < th dose dependent rect. 2 3
29 944.75 temperature 20.0 43200 > th dose independent rect. 5 13
30 944.82 temperature 20.0 43200 > th dose independent rect. 6 11
33 944.99 radiation 1.0 43200 < th dose dependent rect. 9 8
40 945.23 radiation 1.0 43200 < th dose independent rect. 9 7
42 945.24 radiation 1.0 43200 > th dose independent rect. 9 7
50 945.63 temperature 20.0 43200 > th dose independent sin 0 NA
56 946.08 temperature 20.0 43200 < th dose independent rect. 4 15
71 946.47 temperature 20.0 43200 < th dose independent sin 1 NA
110 947.62 radiation 1.0 43200 < th dose dependent rect. 6 1
150 948.65 radiation 1.0 43200 < th dose dependent rect. 6 11
173 949.31 radiation 1.0 43200 < th dose dependent rect. 10 5
188 949.71 wind 9.0 43200 > th dose independent rect. 16 1
196 949.87 radiation 1.0 43200 < th dose dependent rect. 13 4
208 950.08 temperature 25.0 43200 < th dose dependent rect. 11 1
222 950.56 radiation 10.0 43200 > th dose independent rect. 10 1
285 951.98 temperature 20.0 43200 < th dose independent rect. 21 22
306 952.29 temperature 20.0 43200 < th dose independent rect. 6 23
333 952.74 temperature 20.0 43200 > th dose independent rect. 21 21
337 952.76 temperature 20.0 43200 < th dose independent no NA NA
345 952.85 temperature 20.0 43200 > th dose independent rect. 6 23
346 952.85 temperature 20.0 43200 < th dose independent rect. 14 23
397 953.31 temperature 20.0 43200 > th dose independent no NA NA
409 953.39 precipitation 0.1 43200 < th dose independent rect. 9 1
412 953.39 precipitation 0.1 43200 < th dose dependent rect. 9 1
416 953.42 temperature 20.0 43200 > th dose independent rect. 14 23
532 954.47 radiation 1.0 14400 < th dose independent rect. 18 11
536 954.48 precipitation 0.1 43200 > th dose independent rect. 9 1
538 954.48 precipitation 0.1 43200 > th dose dependent rect. 9 1
648 956.01 wind 9.0 43200 < th dose independent rect. 16 1
700 956.80 radiation 20.0 1440 < th dose independent rect. 11 5
713 957.07 temperature 20.0 43200 < th dose independent rect. 2 1
770 958.08 wind 9.0 43200 > th dose dependent rect. 11 2
772 958.09 radiation 1.0 43200 < th dose dependent rect. 3 2
844 959.21 temperature 20.0 43200 > th dose independent rect. 2 1
882 959.75 temperature 20.0 43200 > th dose independent rect. 2 3
922 960.31 temperature 20.0 43200 > th dose independent rect. 16 3
926 960.41 temperature 20.0 43200 < th dose independent rect. 16 3
934 960.65 radiation 1.0 43200 < th dose dependent rect. 19 10