Os01g0754300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0754300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.32 | 0.649 | 1.01 | -4.08 | 0.0558 | 221 | 0.0931 | 466 | -0.00309 | 6.34 | 15 | 90 | -- | -- |
| 213.39 | 0.686 | 2.94 | -0.194 | 0.0622 | 0.206 | -0.236 | -- | -0.0397 | 10.5 | 15.1 | 29 | -- | -- |
| 194.33 | 0.649 | 1.01 | -4.09 | 0.0583 | 221 | -- | 466 | -0.00366 | 5.38 | 15 | 91 | -- | -- |
| 213.55 | 0.685 | 2.94 | -0.207 | 0.0736 | 0.27 | -- | -- | -0.0419 | 8.64 | 15 | 91 | -- | -- |
| 194.51 | 0.65 | 1.01 | -4.09 | -- | 221 | -- | 466 | -0.00218 | -- | 15 | 91 | -- | -- |
| 213.47 | 0.685 | 2.94 | -0.184 | 0.0634 | -- | -0.264 | -- | -0.0374 | 10.8 | -- | -- | -- | -- |
| 213.69 | 0.685 | 2.94 | -0.196 | 0.0766 | -- | -- | -- | -0.0392 | 8.81 | -- | -- | -- | -- |
| 203.83 | 0.668 | 2.93 | -0.0556 | -- | -1.47 | -- | -- | -0.00233 | -- | 16.13 | 398 | -- | -- |
| 203.62 | 0.668 | 2.93 | -- | 0.0719 | -1.5 | -- | -- | 0.00356 | 8.55 | 15.4 | 41 | -- | -- |
| 214.02 | 0.684 | 2.94 | -0.196 | -- | -- | -- | -- | -0.0386 | -- | -- | -- | -- | -- |
| 214.71 | 0.685 | 2.93 | -- | 0.0762 | -- | -- | -- | -0.0173 | 9.01 | -- | -- | -- | -- |
| 203.91 | 0.667 | 2.93 | -- | -- | -1.5 | -- | -- | 0.00423 | -- | 16.2 | 356 | -- | -- |
| 215.04 | 0.684 | 2.94 | -- | -- | -- | -- | -- | -0.0168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.34 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 8 |
| 2 | 192.48 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 3 | 193.07 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 6 |
| 4 | 193.10 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 5 | 193.37 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 6 | 193.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 7 | 193.57 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 8 | 193.59 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 9 | 193.61 | temperature | 15.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 10 | 193.61 | temperature | 15.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 15 | 193.69 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 16 | 193.74 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 17 | 193.75 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 20 | 193.76 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 21 | 193.76 | wind | 9.0 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 25 | 193.78 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 32 | 193.79 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 34 | 193.79 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 41 | 193.80 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 43 | 193.81 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 48 | 193.82 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 50 | 193.83 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 51 | 193.83 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 65 | 193.86 | wind | 7.0 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 72 | 193.91 | humidity | 90.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 74 | 193.91 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 79 | 193.95 | wind | 9.0 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 83 | 193.96 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 101 | 193.98 | temperature | 20.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 103 | 193.98 | humidity | 90.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 104 | 193.98 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 10 | 1 |
| 107 | 193.98 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 114 | 193.98 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 115 | 193.98 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 140 | 194.01 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 143 | 194.02 | temperature | 15.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 157 | 194.03 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 173 | 194.05 | temperature | 15.0 | 720 | < th | dose independent | rect. | 3 | 2 |
| 185 | 194.05 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 203 | 194.06 | wind | 7.0 | 720 | > th | dose independent | rect. | 7 | 1 |
| 209 | 194.06 | temperature | 15.0 | 720 | < th | dose independent | rect. | 1 | 4 |
| 215 | 194.06 | temperature | 20.0 | 90 | < th | dose independent | rect. | 9 | 6 |
| 218 | 194.06 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 288 | 194.08 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 8 |
| 304 | 194.09 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 23 | 18 |
| 306 | 194.09 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 315 | 194.10 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 324 | 194.10 | wind | 9.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 354 | 194.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 4 |
| 360 | 194.11 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 4 |
| 380 | 194.12 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 399 | 194.14 | temperature | 20.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 411 | 194.14 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 433 | 194.16 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 439 | 194.16 | wind | 9.0 | 90 | > th | dose independent | rect. | 11 | 5 |
| 471 | 194.18 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 576 | 194.24 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 585 | 194.25 | temperature | 15.0 | 270 | > th | dose independent | sin | 0 | NA |
| 587 | 194.25 | wind | 9.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 662 | 194.27 | temperature | 15.0 | 90 | > th | dose independent | sin | 21 | NA |
| 685 | 194.28 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 4 |
| 696 | 194.28 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 8 | 4 |
| 697 | 194.28 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 4 |
| 710 | 194.29 | temperature | 15.0 | 270 | > th | dose independent | sin | 5 | NA |
| 724 | 194.30 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 737 | 194.30 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 773 | 194.31 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 778 | 194.31 | wind | 9.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 780 | 194.32 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 782 | 194.32 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 830 | 194.32 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 837 | 194.32 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 840 | 194.32 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 842 | 194.32 | wind | 9.0 | 270 | > th | dose independent | rect. | 11 | 2 |