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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0753800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0272) R2 : 0.228
β1 : -0.72 (0.118) R2dD : 0.114 R2D : -0.0788
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.33 (0.468) R2dE : 0.633 R2E : -0.663
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -44 (4.21) R2dD*E : 0.932 R2D*E : -0.49
γ1 : 0.127 (0.0566) R2dN8 : 0.00908 R2N8 : -0.0173
σ : 0.493
deviance : 112.22
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 76.41
memory length : 21
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 4.35

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.29 0.5 3.06 -0.667 0.138 3.47 -0.302 -34.8 0.121 6.8 78.01 17 17.9 2.91
138.53 0.552 3.01 -0.0916 0.106 1.52 0.687 -- 0.0938 6.95 76.11 4 20 3.01
112.6 0.494 3.08 -0.765 0.125 3.69 -- -39.7 0.106 7.38 77.18 18 18 3.81
139.74 0.554 3.01 -0.079 0.108 1.5 -- -- 0.092 6.81 76.13 4 20 3.11
112.22 0.493 3.09 -0.72 -- 4.33 -- -44 0.127 -- 76.41 21 18 4.35
143.25 0.561 3.01 -0.0881 0.0595 -- 0.663 -- 0.0808 6.84 -- -- -- --
144.36 0.563 3.01 -0.0771 0.0636 -- -- -- 0.0788 6.02 -- -- -- --
140.34 0.554 3.01 -0.0765 -- 1.42 -- -- 0.0933 -- 76.13 4 20 3.11
139.89 0.554 3.01 -- 0.108 1.49 -- -- 0.101 6.87 76.22 4 20 3.95
144.57 0.562 3.01 -0.0753 -- -- -- -- 0.0803 -- -- -- -- --
144.52 0.562 3.01 -- 0.0625 -- -- -- 0.0874 6.08 -- -- -- --
140.46 0.554 3.01 -- -- 1.34 -- -- 0.103 -- 76.67 2 20 3.95
144.72 0.562 3.01 -- -- -- -- -- 0.0886 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.31 humidity 80 10 < th dose dependent rect. 18 2
56 122.65 humidity 70 270 < th dose dependent rect. 16 1
80 125.19 radiation 20 270 > th dose dependent rect. 16 1
96 125.46 humidity 60 270 < th dose independent rect. 16 1
178 129.21 humidity 80 10 < th dose independent rect. 20 1
224 130.39 humidity 80 90 < th dose independent rect. 17 3
228 130.48 atmosphere 1005 90 < th dose independent rect. 18 1
242 131.09 wind 9 270 > th dose independent rect. 18 1
261 131.55 temperature 25 90 < th dose independent rect. 17 3
267 131.67 temperature 25 10 < th dose independent rect. 16 5
287 131.86 wind 9 90 > th dose dependent rect. 17 3
311 132.02 wind 9 10 > th dose independent rect. 18 1
314 132.02 wind 9 10 > th dose dependent rect. 18 1
369 132.34 temperature 25 270 < th dose independent rect. 17 1
412 132.81 wind 5 270 > th dose independent rect. 17 1
419 132.99 wind 9 90 > th dose independent sin 12 NA
421 133.01 wind 9 90 < th dose independent sin 12 NA
428 133.14 atmosphere 1005 270 < th dose dependent rect. 16 1
451 133.43 wind 5 90 > th dose independent rect. 17 3
456 133.46 wind 3 90 > th dose dependent rect. 17 3
459 133.47 wind 9 90 > th dose dependent sin 12 NA
472 133.70 wind 3 270 > th dose dependent rect. 17 1
616 134.38 radiation 1 270 < th dose dependent rect. 17 1
634 134.67 wind 9 10 > th dose independent rect. 17 3
645 134.70 radiation 1 270 < th dose independent rect. 17 1
684 134.76 temperature 25 90 < th dose independent rect. 11 9
696 134.82 temperature 25 90 < th dose independent rect. 3 17
796 135.19 humidity 80 270 < th dose dependent sin 13 NA
806 135.20 atmosphere 1010 270 < th dose dependent rect. 15 5
834 135.30 wind 3 30 > th dose independent rect. 19 1
838 135.31 radiation 1 270 > th dose dependent rect. 17 2
934 135.63 temperature 25 10 < th dose independent rect. 12 9
981 135.83 temperature 20 30 > th dose independent rect. 17 3
994 135.85 temperature 30 90 < th dose dependent rect. 17 3