Os01g0750400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os01g0750400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.03 | 0.656 | 3.9 | 0.735 | 0.618 | -0.932 | 0.476 | -0.673 | -0.192 | 19.8 | 21.7 | 884 | -- | -- |
| 196.2 | 0.652 | 3.88 | 0.921 | 0.621 | -0.909 | 0.253 | -- | -0.147 | 19.8 | 21.8 | 875 | -- | -- |
| 195.58 | 0.651 | 3.9 | 0.765 | 0.613 | -0.93 | -- | -0.527 | -0.181 | 19.9 | 21.76 | 898 | -- | -- |
| 196.37 | 0.653 | 3.88 | 0.919 | 0.619 | -0.908 | -- | -- | -0.147 | 19.8 | 21.8 | 874 | -- | -- |
| 209.75 | 0.675 | 3.89 | 0.714 | -- | -0.991 | -- | -0.817 | -0.191 | -- | 21.8 | 1413 | -- | -- |
| 226.46 | 0.705 | 3.94 | 0.581 | 0.5 | -- | 0.31 | -- | -0.423 | 19 | -- | -- | -- | -- |
| 226.71 | 0.705 | 3.94 | 0.575 | 0.5 | -- | -- | -- | -0.422 | 19 | -- | -- | -- | -- |
| 211.37 | 0.677 | 3.86 | 0.952 | -- | -0.946 | -- | -- | -0.143 | -- | 21.79 | 1413 | -- | -- |
| 215.69 | 0.684 | 3.91 | -- | 0.597 | -0.67 | -- | -- | -0.292 | 19.8 | 22.1 | 791 | -- | -- |
| 239.86 | 0.724 | 3.93 | 0.565 | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
| 235.42 | 0.718 | 3.95 | -- | 0.494 | -- | -- | -- | -0.486 | 19.1 | -- | -- | -- | -- |
| 231.3 | 0.708 | 3.9 | -- | -- | -0.649 | -- | -- | -0.305 | -- | 22.16 | 1383 | -- | -- |
| 248.27 | 0.735 | 3.94 | -- | -- | -- | -- | -- | -0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 3 | 197.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 5 | 197.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 6 | 197.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 32 | 198.34 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 33 | 198.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 13 |
| 36 | 198.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 58 | 198.80 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 67 | 198.91 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 72 | 199.05 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 87 | 199.23 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 96 | 199.28 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 118 | 199.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 154 | 199.70 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 221 | 200.07 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 226 | 200.09 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 249 | 200.24 | temperature | 30 | 10 | < th | dose dependent | sin | 7 | NA |
| 271 | 200.44 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 274 | 200.45 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 284 | 200.53 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 294 | 200.58 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 355 | 201.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 365 | 201.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 375 | 201.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 378 | 201.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 384 | 201.20 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 388 | 201.21 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 488 | 201.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 524 | 201.95 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 568 | 202.11 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 642 | 202.33 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 646 | 202.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 651 | 202.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 656 | 202.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 682 | 202.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 754 | 202.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 757 | 202.62 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 806 | 202.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 816 | 202.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 945 | 202.99 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 965 | 203.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 985 | 203.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |