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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0750300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cellulose synthase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.63 (0.0757) R2 : 0.534
β1 : -6.27 (0.294) R2dD : 0.548 R2D : 0.385
β2 : 1.66 (0.258) R2dC : 0.0757 R2C : -0.0503
β3 : -3.13 (0.473) R2dE : 0.0838 R2E : -0.052
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.37 (1.44) R2dD*E : 0.0324 R2D*E : -0.0924
γ1 : -1.42 (0.169) R2dN8 : 0.117 R2N8 : -0.031
σ : 1.41
deviance : 915.69
__
_____
C
peak time of C : 6.51
E
wheather : radiation
threshold : 9.982
memory length : 1246
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
922.71 1.43 5.67 -6.32 1.05 -2.57 1.43 5.95 -1.54 6.06 10 1342 13.3 --
953.56 1.44 5.62 -5.78 1.64 -2.86 2.72 -- -1.34 6.65 10 1252 11.7 --
915.69 1.41 5.63 -6.27 1.66 -3.13 -- 7.37 -1.42 6.51 9.982 1246 12.2 --
970.66 1.45 5.63 -5.75 1.75 -2.94 -- -- -1.37 6.77 10 1246 11.4 --
978.69 1.46 5.67 -6.39 -- -2.09 -- 7.26 -1.52 -- 10 1397 12.5 --
1026.28 1.5 5.6 -5.83 0.615 -- 2.56 -- -1.1 5.74 -- -- -- --
1042.09 1.51 5.6 -5.81 0.632 -- -- -- -1.11 5.35 -- -- -- --
998.66 1.47 5.69 -5.83 -- -1.78 -- -- -1.44 -- 12.33 1472 12.5 --
1834.16 1.99 5.63 -- 2.38 -3.79 -- -- -0.901 8.33 9.758 1286 8.93 --
1062.91 1.52 5.61 -5.79 -- -- -- -- -1.09 -- -- -- -- --
1932.53 2.06 5.46 -- 0.537 -- -- -- -0.46 5.77 -- -- -- --
1758.51 1.95 5.61 -- -- -3.59 -- -- -1.35 -- 10 2898 9.16 --
1947.5 2.06 5.47 -- -- -- -- -- -0.449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 911.75 atmosphere 995 43200 < th dose dependent sin 15 NA
2 913.34 atmosphere 995 43200 < th dose dependent rect. 13 17
8 916.93 radiation 10 1440 < th dose independent rect. 15 1
9 917.05 atmosphere 995 43200 < th dose independent rect. 17 17
10 917.28 atmosphere 995 43200 > th dose independent sin 10 NA
11 917.34 atmosphere 995 43200 > th dose independent rect. 17 17
12 917.98 atmosphere 995 43200 < th dose independent sin 10 NA
13 918.89 wind 3 4320 > th dose independent rect. 8 1
15 919.00 atmosphere 995 43200 > th dose independent rect. 18 15
21 920.79 wind 1 14400 < th dose independent rect. 1 1
30 921.93 wind 3 4320 < th dose independent rect. 8 1
34 924.14 wind 1 14400 < th dose dependent rect. 1 3
35 924.17 wind 3 4320 < th dose dependent rect. 6 1
36 925.99 wind 3 4320 > th dose independent rect. 5 4
37 926.00 wind 1 14400 < th dose independent rect. 24 3
38 926.03 wind 3 4320 > th dose independent rect. 4 6
41 926.36 wind 3 4320 < th dose independent rect. 5 4
44 927.11 wind 3 4320 > th dose independent rect. 2 8
50 927.60 wind 3 4320 < th dose independent rect. 2 8
51 927.71 atmosphere 995 43200 < th dose dependent rect. 17 7
52 927.78 wind 1 14400 > th dose independent rect. 1 1
55 928.31 atmosphere 995 43200 < th dose dependent rect. 18 5
58 929.22 radiation 10 1440 < th dose dependent rect. 11 7
67 930.09 radiation 10 1440 < th dose dependent rect. 11 17
68 930.10 radiation 10 1440 < th dose dependent rect. 11 14
80 930.49 atmosphere 995 43200 < th dose independent rect. 18 7
81 930.57 wind 5 4320 < th dose dependent rect. 5 4
103 932.54 atmosphere 995 43200 > th dose independent rect. 18 8
111 933.24 radiation 10 1440 > th dose independent rect. 11 1
118 933.37 wind 9 4320 < th dose dependent rect. 6 1
124 933.47 wind 5 4320 < th dose dependent rect. 8 1
133 934.11 radiation 10 1440 < th dose dependent rect. 11 2
161 934.86 wind 3 14400 < th dose independent rect. 23 1
173 935.70 atmosphere 995 43200 < th dose dependent rect. 16 10
174 935.71 wind 1 4320 > th dose dependent rect. 5 4
181 935.88 wind 3 14400 > th dose independent rect. 23 1
188 936.32 radiation 10 1440 < th dose dependent sin 19 NA
209 937.12 wind 1 14400 > th dose independent rect. 24 3
217 937.40 wind 1 4320 > th dose dependent rect. 8 1
230 937.85 wind 1 14400 < th dose independent rect. 14 1
246 938.50 wind 1 14400 < th dose dependent rect. 14 1
248 938.56 wind 1 4320 > th dose dependent rect. 6 1
260 938.88 atmosphere 995 43200 > th dose independent rect. 20 13
264 938.90 wind 1 14400 > th dose independent rect. 14 1
278 939.10 atmosphere 995 43200 < th dose independent rect. 21 12
282 939.17 atmosphere 995 43200 > th dose independent rect. 20 2
314 940.06 atmosphere 995 43200 < th dose independent rect. 21 1
327 940.06 atmosphere 995 43200 < th dose dependent rect. 21 1
350 940.67 radiation 10 1440 > th dose independent rect. 11 19
351 940.71 radiation 10 1440 > th dose independent rect. 11 7
392 942.13 wind 3 4320 < th dose independent sin 7 NA
413 942.84 wind 3 4320 > th dose independent sin 7 NA
462 943.84 wind 5 14400 < th dose dependent rect. 22 2
492 944.29 wind 5 4320 < th dose dependent rect. 23 11
507 944.72 atmosphere 995 43200 < th dose independent rect. 2 6
510 944.77 atmosphere 995 43200 < th dose dependent rect. 2 6
512 944.79 atmosphere 995 43200 > th dose independent rect. 3 5
535 945.15 atmosphere 995 43200 < th dose dependent rect. 21 11
633 947.21 radiation 10 1440 > th dose independent sin 17 NA
642 947.35 radiation 10 1440 < th dose independent rect. 15 13
644 947.36 radiation 10 1440 < th dose independent rect. 15 10
680 948.01 wind 3 1440 < th dose dependent sin 4 NA
741 948.85 wind 1 4320 < th dose dependent rect. 3 4
797 949.40 radiation 30 4320 > th dose independent rect. 15 17
868 950.53 wind 3 1440 < th dose dependent rect. 23 19
935 951.34 wind 1 14400 > th dose dependent rect. 22 2
972 951.61 radiation 10 1440 < th dose independent rect. 11 7