Os01g0750100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13).
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Os01g0750100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.15 | 0.431 | 10.3 | 1.24 | 0.265 | -1.2 | -0.406 | -1.81 | 0.523 | 23.2 | 25.6 | 6048 | -- | -- |
| 85.16 | 0.43 | 10.3 | 1.74 | 0.245 | -1.33 | -0.393 | -- | 0.637 | 23.2 | 26.1 | 6061 | -- | -- |
| 84.79 | 0.429 | 10.3 | 1.26 | 0.268 | -1.19 | -- | -1.76 | 0.517 | 23.2 | 25.9 | 6069 | -- | -- |
| 85.77 | 0.431 | 10.3 | 1.77 | 0.254 | -1.34 | -- | -- | 0.641 | 23.1 | 26.1 | 6063 | -- | -- |
| 89.07 | 0.44 | 10.3 | 1.39 | -- | -1.23 | -- | -1.34 | 0.542 | -- | 26 | 6014 | -- | -- |
| 161.72 | 0.596 | 10.3 | 1.24 | 0.226 | -- | -0.54 | -- | 0.473 | 23.4 | -- | -- | -- | -- |
| 162.97 | 0.598 | 10.3 | 1.26 | 0.229 | -- | -- | -- | 0.475 | 23.6 | -- | -- | -- | -- |
| 89.67 | 0.441 | 10.2 | 1.77 | -- | -1.34 | -- | -- | 0.626 | -- | 26.25 | 6011 | -- | -- |
| 157.41 | 0.584 | 10.3 | -- | 0.28 | -1.03 | -- | -- | 0.333 | 22.7 | 28.29 | 6210 | -- | -- |
| 166.25 | 0.602 | 10.3 | 1.27 | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
| 204.9 | 0.67 | 10.3 | -- | 0.244 | -- | -- | -- | 0.335 | 23.9 | -- | -- | -- | -- |
| 161.42 | 0.592 | 10.3 | -- | -- | -1.01 | -- | -- | 0.313 | -- | 28.3 | 6048 | -- | -- |
| 208.64 | 0.674 | 10.3 | -- | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 85.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 6 | 86.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 7 | 86.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 8 | 86.67 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 9 | 86.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 12 | 86.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 13 | 86.79 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 17 | 86.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 18 | 86.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 19 | 86.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 32 | 86.89 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 54 | 87.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 94 | 87.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 98 | 87.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 102 | 87.38 | temperature | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 103 | 87.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 105 | 87.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 109 | 87.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 123 | 87.52 | temperature | 30 | 14400 | > th | dose independent | sin | 12 | NA |
| 210 | 87.96 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 240 | 88.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 261 | 88.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 300 | 88.51 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 356 | 88.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 479 | 89.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 524 | 89.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 525 | 89.28 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 526 | 89.28 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 620 | 89.28 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 622 | 89.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 629 | 89.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 636 | 89.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 640 | 89.30 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 641 | 89.30 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 726 | 89.31 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 810 | 89.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 936 | 89.51 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |