Os01g0749300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heat shock factor.
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Os01g0749300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heat shock factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22 | 0.22 | 10.5 | 1.04 | 0.455 | 0.44 | -0.319 | 0.546 | 0.484 | 9.84 | 71.17 | 1172 | -- | -- |
| 22.54 | 0.221 | 10.4 | 1.1 | 0.46 | 0.473 | -0.2 | -- | 0.496 | 9.87 | 73 | 1174 | -- | -- |
| 22.26 | 0.22 | 10.5 | 1.03 | 0.455 | 0.442 | -- | 0.499 | 0.491 | 9.91 | 72 | 1186 | -- | -- |
| 22.67 | 0.222 | 10.4 | 1.1 | 0.454 | 0.471 | -- | -- | 0.501 | 9.91 | 72.08 | 1174 | -- | -- |
| 27.61 | 0.245 | 10.5 | 1.07 | -- | 0.804 | -- | 0.293 | 0.485 | -- | 74.94 | 911 | -- | -- |
| 29.71 | 0.256 | 10.5 | 1.02 | 0.568 | -- | -0.0793 | -- | 0.443 | 10.4 | -- | -- | -- | -- |
| 29.74 | 0.255 | 10.5 | 1.02 | 0.568 | -- | -- | -- | 0.443 | 10.4 | -- | -- | -- | -- |
| 27.76 | 0.245 | 10.5 | 1.1 | -- | 0.811 | -- | -- | 0.498 | -- | 74.98 | 907 | -- | -- |
| 44.21 | 0.31 | 10.5 | -- | 0.452 | 0.582 | -- | -- | 0.449 | 10.2 | 72 | 29313 | -- | -- |
| 49.5 | 0.329 | 10.5 | 1.01 | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
| 57 | 0.353 | 10.5 | -- | 0.563 | -- | -- | -- | 0.33 | 10.3 | -- | -- | -- | -- |
| 49.91 | 0.329 | 10.5 | -- | -- | 1.11 | -- | -- | 0.411 | -- | 65.77 | 29652 | -- | -- |
| 76.28 | 0.408 | 10.5 | -- | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.96 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 2 | 21.97 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 15 | 22.06 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 16 | 22.07 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 17 | 22.07 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 58 | 22.21 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 59 | 22.21 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 61 | 22.21 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 73 | 22.23 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 12 |
| 91 | 22.29 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 19 |
| 93 | 22.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 98 | 22.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 106 | 22.33 | humidity | 70 | 1440 | > th | dose independent | sin | 17 | NA |
| 159 | 22.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 167 | 22.42 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 180 | 22.43 | humidity | 60 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 184 | 22.44 | humidity | 50 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 189 | 22.45 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 248 | 22.48 | humidity | 50 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 250 | 22.49 | humidity | 70 | 1440 | < th | dose independent | sin | 16 | NA |
| 267 | 22.50 | humidity | 50 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 270 | 22.51 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 281 | 22.51 | humidity | 70 | 14400 | < th | dose dependent | sin | 13 | NA |
| 282 | 22.51 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 289 | 22.52 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 301 | 22.54 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 307 | 22.54 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 327 | 22.55 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 337 | 22.56 | humidity | 70 | 720 | > th | dose independent | rect. | 5 | 18 |
| 347 | 22.58 | humidity | 70 | 14400 | < th | dose independent | sin | 13 | NA |
| 348 | 22.58 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 362 | 22.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 370 | 22.58 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 420 | 22.62 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 485 | 22.65 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 523 | 22.66 | humidity | 80 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 588 | 22.69 | humidity | 80 | 1440 | < th | dose dependent | sin | 16 | NA |
| 607 | 22.71 | humidity | 70 | 14400 | > th | dose independent | sin | 13 | NA |
| 645 | 22.73 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 663 | 22.74 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 665 | 22.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 753 | 22.79 | humidity | 50 | 1440 | > th | dose dependent | rect. | 14 | 6 |
| 784 | 22.80 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 787 | 22.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 806 | 22.81 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 820 | 22.82 | wind | 7 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 965 | 22.87 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 7 |