Os01g0748600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0748600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.59 | 0.197 | 11.8 | -0.000931 | 0.79 | -0.43 | 0.721 | -0.0219 | 0.256 | 6.9 | 10.94 | 96 | -- | -- |
| 17.59 | 0.195 | 11.8 | -0.00112 | 0.789 | -0.431 | 0.716 | -- | 0.257 | 6.9 | 10.95 | 97 | -- | -- |
| 18.81 | 0.202 | 11.8 | 0.0199 | 0.776 | -0.422 | -- | 0.0629 | 0.258 | 6.82 | 11.14 | 107 | -- | -- |
| 18.82 | 0.202 | 11.8 | 0.0196 | 0.785 | -0.429 | -- | -- | 0.256 | 6.86 | 11.15 | 107 | -- | -- |
| 20.91 | 0.213 | 11.8 | 0.000983 | -- | -0.986 | -- | -0.826 | 0.278 | -- | 3.71 | 632 | -- | -- |
| 22.84 | 0.224 | 11.8 | -0.0431 | 0.886 | -- | 0.629 | -- | 0.221 | 5.07 | -- | -- | -- | -- |
| 23.84 | 0.229 | 11.8 | -0.044 | 0.89 | -- | -- | -- | 0.218 | 5.03 | -- | -- | -- | -- |
| 21.74 | 0.217 | 11.8 | -0.0168 | -- | -1.01 | -- | -- | 0.281 | -- | 2.333 | 630 | -- | -- |
| 18.82 | 0.202 | 11.8 | -- | 0.782 | -0.428 | -- | -- | 0.253 | 6.87 | 10.95 | 108 | -- | -- |
| 65.43 | 0.378 | 11.8 | -0.0119 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 23.89 | 0.229 | 11.8 | -- | 0.889 | -- | -- | -- | 0.223 | 5.03 | -- | -- | -- | -- |
| 21.73 | 0.217 | 11.8 | -- | -- | -1.02 | -- | -- | 0.275 | -- | 2.33 | 630 | -- | -- |
| 65.43 | 0.378 | 11.8 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.81 | radiation | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 5 | 17.04 | radiation | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 9 | 17.13 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 17 |
| 12 | 17.17 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 17 |
| 14 | 17.22 | humidity | 70 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 21 | 17.29 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 18 |
| 29 | 17.35 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 19 |
| 43 | 17.46 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 47 | 17.47 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 48 | 17.48 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 49 | 17.49 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 16 |
| 79 | 17.63 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 81 | 17.63 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 84 | 17.65 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 11 |
| 98 | 17.66 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 177 | 17.66 | humidity | 50 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 179 | 17.67 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 17 |
| 193 | 17.72 | humidity | 50 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 196 | 17.73 | humidity | 60 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 246 | 17.80 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 257 | 17.84 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 273 | 17.86 | radiation | 10 | 90 | < th | dose independent | rect. | 13 | 22 |
| 323 | 17.93 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 324 | 17.93 | radiation | 1 | 10 | > th | dose independent | rect. | 8 | 11 |
| 343 | 17.94 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 22 |
| 352 | 17.95 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 17 |
| 411 | 18.04 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 494 | 18.13 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 14 |
| 503 | 18.14 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 537 | 18.18 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 21 |
| 624 | 18.21 | radiation | 10 | 30 | < th | dose independent | rect. | 4 | 19 |
| 692 | 18.23 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 9 |
| 703 | 18.24 | radiation | 20 | 90 | < th | dose dependent | sin | 0 | NA |
| 776 | 18.32 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 17 |
| 791 | 18.33 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 16 |
| 845 | 18.36 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 23 |
| 881 | 18.39 | radiation | 10 | 90 | < th | dose independent | sin | 1 | NA |
| 914 | 18.41 | humidity | 80 | 30 | < th | dose independent | rect. | 19 | 23 |
| 926 | 18.42 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 972 | 18.44 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 973 | 18.44 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 20 |