Os01g0748100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0748100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.81 | 0.341 | 7.77 | -1.47 | 0.285 | 0.972 | 0.0707 | -0.733 | -0.0951 | 0.502 | 24.9 | 765 | -- | -- |
| 53.51 | 0.341 | 7.79 | -1.68 | 0.313 | 0.955 | 0.166 | -- | -0.167 | 1.62 | 24.89 | 856 | -- | -- |
| 52.46 | 0.337 | 7.76 | -1.45 | 0.327 | 0.999 | -- | -0.804 | -0.0914 | 1.76 | 24.85 | 864 | -- | -- |
| 53.6 | 0.341 | 7.79 | -1.69 | 0.314 | 0.95 | -- | -- | -0.168 | 1.83 | 24.82 | 857 | -- | -- |
| 56.61 | 0.35 | 7.78 | -1.41 | -- | 1.04 | -- | -0.727 | -0.139 | -- | 25.1 | 1879 | -- | -- |
| 83.53 | 0.428 | 7.86 | -1.98 | 0.287 | -- | -0.374 | -- | -0.519 | 6.93 | -- | -- | -- | -- |
| 83.88 | 0.429 | 7.86 | -1.99 | 0.287 | -- | -- | -- | -0.518 | 6.78 | -- | -- | -- | -- |
| 55.04 | 0.346 | 7.8 | -1.69 | -- | 0.786 | -- | -- | -0.172 | -- | 24.3 | 515 | -- | -- |
| 120.05 | 0.51 | 7.72 | -- | 0.16 | 1.48 | -- | -- | 0.11 | 2.63 | 24.7 | 2073 | -- | -- |
| 88.18 | 0.439 | 7.87 | -1.98 | -- | -- | -- | -- | -0.513 | -- | -- | -- | -- | -- |
| 188.15 | 0.642 | 7.81 | -- | 0.265 | -- | -- | -- | -0.297 | 7.24 | -- | -- | -- | -- |
| 67.82 | 0.384 | 7.7 | -- | -- | 1.72 | -- | -- | 0.17 | -- | 19.3 | 43742 | -- | -- |
| 191.86 | 0.647 | 7.82 | -- | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.78 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 20 |
| 14 | 51.63 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 19 |
| 19 | 52.06 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 21 |
| 21 | 52.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 31 | 52.41 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 46 | 52.58 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 55 | 52.70 | temperature | 25 | 1440 | > th | dose independent | sin | 13 | NA |
| 69 | 52.84 | temperature | 25 | 1440 | < th | dose independent | sin | 13 | NA |
| 88 | 52.97 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 98 | 53.03 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 106 | 53.10 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 123 | 53.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 142 | 53.28 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 155 | 53.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 171 | 53.41 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 193 | 53.55 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 22 |
| 203 | 53.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 218 | 53.70 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 23 |
| 273 | 53.96 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 292 | 54.03 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 352 | 54.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 389 | 54.47 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 409 | 54.53 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 497 | 54.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 535 | 55.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 562 | 55.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 570 | 55.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 582 | 55.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 15 |
| 592 | 55.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 609 | 55.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 662 | 55.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 695 | 55.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 763 | 55.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 841 | 56.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 890 | 56.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 917 | 56.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |