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Os01g0747700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding S4 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.015) R2 : 0.725
β1 : -1.85 (0.0548) R2dD : 0.715 R2D : 0.566
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.449 (0.032) R2dN8 : 0.159 R2N8 : 0.0103
σ : 0.281
deviance : 36.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.24 0.258 10.6 -1.89 0.295 -0.475 0.327 0.667 -0.51 9.35 79.69 686 -- --
30.93 0.259 10.6 -1.84 0.301 -0.487 0.622 -- -0.505 9.53 79.81 714 -- --
30.49 0.257 10.6 -1.9 0.299 -0.484 -- 0.893 -0.51 9.1 79.09 675 -- --
31.77 0.264 10.6 -1.83 0.244 -0.383 -- -- -0.502 3.52 77.64 652 -- --
33.19 0.27 10.6 -1.84 -- -0.225 -- 0.18 -0.48 -- 79.09 675 -- --
34.42 0.275 10.6 -1.88 0.0809 -- 0.57 -- -0.45 11 -- -- -- --
35.79 0.28 10.6 -1.85 0.0785 -- -- -- -0.448 11.6 -- -- -- --
33.32 0.27 10.6 -1.83 -- -0.218 -- -- -0.478 -- 79.09 675 -- --
117.39 0.507 10.6 -- 0.249 -0.533 -- -- -0.362 3.99 85 1607 -- --
36.18 0.281 10.6 -1.85 -- -- -- -- -0.449 -- -- -- -- --
126.25 0.526 10.6 -- 0.104 -- -- -- -0.242 12.7 -- -- -- --
118.13 0.506 10.6 -- -- -0.711 -- -- -0.379 -- 85 1595 -- --
126.93 0.526 10.6 -- -- -- -- -- -0.243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.33 humidity 80.0 1440 > th dose dependent rect. 10 4
2 28.35 humidity 80.0 1440 > th dose dependent rect. 9 6
8 28.96 radiation 1.0 1440 > th dose independent rect. 9 3
9 28.98 radiation 1.0 1440 < th dose independent rect. 8 6
10 28.98 radiation 1.0 1440 < th dose dependent rect. 8 6
12 29.00 radiation 1.0 1440 > th dose independent rect. 8 6
28 29.11 radiation 1.0 1440 < th dose independent rect. 9 2
29 29.11 radiation 1.0 1440 < th dose dependent rect. 9 2
31 29.13 humidity 90.0 1440 < th dose independent rect. 9 5
75 29.57 humidity 80.0 1440 > th dose independent rect. 10 4
79 29.59 humidity 90.0 1440 > th dose independent rect. 9 6
84 29.63 humidity 60.0 43200 > th dose independent rect. 24 7
103 29.74 atmosphere 995.0 720 > th dose dependent rect. 11 9
116 29.78 humidity 70.0 43200 < th dose dependent rect. 24 7
129 29.81 atmosphere 1010.0 720 < th dose dependent rect. 13 5
134 29.83 precipitation 0.1 1440 > th dose independent rect. 2 1
136 29.83 precipitation 0.1 1440 > th dose dependent rect. 2 1
144 29.87 wind 9.0 1440 > th dose dependent rect. 9 1
152 29.88 wind 9.0 1440 > th dose independent rect. 9 1
166 29.89 temperature 15.0 1440 > th dose independent rect. 11 1
173 29.91 atmosphere 995.0 1440 > th dose dependent rect. 13 1
178 29.91 radiation 10.0 1440 < th dose dependent rect. 9 20
182 29.92 radiation 10.0 1440 < th dose dependent rect. 9 11
183 29.92 radiation 10.0 1440 < th dose dependent rect. 9 13
184 29.92 radiation 10.0 1440 < th dose dependent rect. 9 16
200 29.94 humidity 80.0 720 > th dose dependent rect. 23 20
202 29.95 atmosphere 1010.0 720 < th dose dependent rect. 15 2
209 29.97 humidity 60.0 43200 < th dose independent rect. 2 5
211 29.97 humidity 60.0 43200 < th dose independent rect. 24 7
228 30.00 atmosphere 1015.0 1440 < th dose dependent rect. 13 1
231 30.00 atmosphere 995.0 720 > th dose dependent rect. 9 14
236 30.01 humidity 80.0 720 > th dose dependent rect. 7 22
250 30.02 temperature 15.0 1440 > th dose independent rect. 12 19
258 30.03 temperature 15.0 1440 > th dose independent rect. 19 12
259 30.03 humidity 90.0 720 > th dose independent rect. 8 18
272 30.05 temperature 15.0 14400 > th dose independent rect. 7 2
273 30.05 humidity 80.0 1440 > th dose independent rect. 22 16
275 30.05 humidity 90.0 720 > th dose dependent sin 21 NA
277 30.05 atmosphere 1015.0 720 < th dose dependent sin 20 NA
281 30.05 humidity 90.0 720 > th dose dependent rect. 8 13
285 30.06 temperature 15.0 1440 > th dose independent rect. 16 15
307 30.09 temperature 15.0 1440 > th dose independent rect. 14 17
338 30.11 temperature 15.0 1440 > th dose independent rect. 12 21
343 30.11 humidity 90.0 720 > th dose dependent rect. 8 16
352 30.12 atmosphere 995.0 720 > th dose dependent rect. 13 7
357 30.13 atmosphere 995.0 720 > th dose dependent sin 20 NA
366 30.14 wind 9.0 14400 > th dose dependent rect. 19 1
396 30.16 precipitation 0.1 1440 < th dose independent rect. 6 10
397 30.16 humidity 70.0 43200 < th dose dependent rect. 1 2
400 30.16 temperature 20.0 1440 < th dose dependent rect. 8 8
403 30.16 precipitation 0.1 1440 < th dose dependent rect. 6 10
418 30.17 humidity 90.0 720 > th dose dependent rect. 8 18
420 30.17 humidity 70.0 10 > th dose dependent rect. 7 23
424 30.18 precipitation 0.1 1440 > th dose independent rect. 9 4
432 30.18 precipitation 0.1 1440 > th dose dependent rect. 9 4
450 30.19 atmosphere 1015.0 720 < th dose dependent rect. 9 15
464 30.20 humidity 80.0 1440 < th dose independent rect. 21 17
483 30.21 temperature 15.0 1440 > th dose independent rect. 8 23
497 30.22 temperature 15.0 1440 > th dose independent rect. 3 19
499 30.22 temperature 15.0 1440 > th dose independent rect. 3 21
521 30.23 temperature 15.0 1440 > th dose independent rect. 19 23
546 30.24 temperature 20.0 720 < th dose dependent rect. 10 5
552 30.25 temperature 15.0 1440 > th dose independent sin 13 NA
553 30.25 wind 9.0 14400 > th dose independent rect. 24 1
554 30.25 temperature 15.0 14400 < th dose independent rect. 7 1
559 30.25 temperature 10.0 43200 < th dose independent rect. 20 1
611 30.25 humidity 80.0 720 > th dose dependent no NA NA
612 30.25 wind 9.0 14400 > th dose dependent rect. 24 1
613 30.25 temperature 15.0 14400 < th dose dependent rect. 7 1
618 30.25 temperature 10.0 43200 < th dose dependent rect. 20 1
673 30.26 precipitation 0.1 720 > th dose independent rect. 6 10
710 30.27 temperature 20.0 720 < th dose dependent rect. 11 3
729 30.28 temperature 20.0 720 < th dose independent rect. 11 4
746 30.28 temperature 15.0 1440 > th dose independent rect. 23 23
761 30.29 humidity 50.0 43200 < th dose independent rect. 19 1
766 30.29 temperature 15.0 1440 > th dose independent rect. 7 7
768 30.29 temperature 15.0 1440 > th dose independent rect. 7 9
774 30.29 temperature 15.0 1440 > th dose independent rect. 16 23
811 30.30 temperature 15.0 1440 > th dose independent rect. 14 23
818 30.30 humidity 80.0 720 > th dose dependent rect. 4 23
822 30.31 temperature 15.0 1440 > th dose independent no NA NA
833 30.31 temperature 15.0 1440 < th dose independent rect. 20 7
836 30.31 temperature 15.0 1440 < th dose independent rect. 19 9
846 30.31 temperature 15.0 1440 > th dose independent rect. 19 20
853 30.31 radiation 20.0 1440 < th dose dependent rect. 12 4
855 30.31 temperature 15.0 1440 < th dose dependent rect. 22 6
868 30.32 temperature 15.0 1440 < th dose independent sin 13 NA
871 30.32 temperature 15.0 1440 < th dose independent rect. 22 4
875 30.32 temperature 15.0 1440 < th dose independent rect. 17 12
881 30.32 temperature 15.0 1440 < th dose independent rect. 13 17
884 30.32 temperature 15.0 1440 < th dose independent rect. 10 18
895 30.32 temperature 15.0 1440 < th dose independent rect. 6 21
897 30.32 temperature 15.0 1440 < th dose independent rect. 4 22
901 30.32 temperature 15.0 1440 < th dose dependent sin 10 NA
909 30.32 temperature 15.0 1440 < th dose dependent rect. 21 9
919 30.32 temperature 15.0 1440 < th dose dependent rect. 19 16
963 30.33 temperature 15.0 1440 > th dose independent rect. 16 21
983 30.33 temperature 15.0 1440 < th dose dependent rect. 24 1
984 30.33 temperature 15.0 1440 < th dose dependent rect. 23 3