Os01g0747400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0747400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.04 | 0.402 | 10.6 | 0.0475 | 1.03 | 1.02 | 0.185 | -0.721 | 0.0268 | 15 | 25.17 | 5430 | -- | -- |
| 73.26 | 0.399 | 10.6 | 0.23 | 1.02 | 0.94 | 0.176 | -- | 0.059 | 15 | 25.05 | 5424 | -- | -- |
| 73.14 | 0.398 | 10.6 | 0.035 | 1.03 | 1.02 | -- | -0.806 | 0.0281 | 15 | 25.4 | 5452 | -- | -- |
| 73.36 | 0.399 | 10.5 | 0.242 | 1.03 | 0.944 | -- | -- | 0.0663 | 15 | 25.03 | 5433 | -- | -- |
| 117.32 | 0.507 | 10.6 | 0.188 | -- | 1.4 | -- | -1.84 | 0.00303 | -- | 25.4 | 5452 | -- | -- |
| 104.47 | 0.479 | 10.5 | 0.588 | 0.951 | -- | 0.0303 | -- | 0.144 | 15.2 | -- | -- | -- | -- |
| 104.47 | 0.479 | 10.5 | 0.589 | 0.952 | -- | -- | -- | 0.144 | 15.2 | -- | -- | -- | -- |
| 113.76 | 0.499 | 10.6 | 0.362 | -- | 1.3 | -- | -- | -0.0135 | -- | 24.27 | 11953 | -- | -- |
| 74.65 | 0.402 | 10.6 | -- | 1.03 | 1.02 | -- | -- | 0.00534 | 15 | 24.2 | 5429 | -- | -- |
| 155.88 | 0.583 | 10.5 | 0.548 | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
| 113.61 | 0.499 | 10.5 | -- | 0.94 | -- | -- | -- | 0.0782 | 15.2 | -- | -- | -- | -- |
| 112.08 | 0.495 | 10.6 | -- | -- | 1.42 | -- | -- | -0.108 | -- | 23.06 | 11958 | -- | -- |
| 163.81 | 0.597 | 10.5 | -- | -- | -- | -- | -- | 0.058 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 3 | 72.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 4 | 72.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 5 | 72.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 45 | 73.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 51 | 73.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 61 | 73.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 65 | 73.72 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 71 | 73.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 82 | 73.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 106 | 73.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 107 | 73.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 118 | 73.91 | temperature | 25 | 4320 | > th | dose dependent | sin | 2 | NA |
| 129 | 73.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 169 | 73.99 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 194 | 74.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 283 | 74.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 311 | 74.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 316 | 74.29 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 326 | 74.29 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 336 | 74.31 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 346 | 74.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 365 | 74.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 379 | 74.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 389 | 74.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 398 | 74.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 431 | 74.40 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 433 | 74.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 15 |
| 443 | 74.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 447 | 74.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 463 | 74.44 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 468 | 74.45 | humidity | 80 | 43200 | > th | dose dependent | sin | 15 | NA |
| 485 | 74.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 497 | 74.50 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 555 | 74.57 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 577 | 74.60 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 630 | 74.64 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 647 | 74.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 771 | 74.78 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 818 | 74.82 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |