Os01g0746200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nup85 nucleoporin family protein.
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Os01g0746200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nup85 nucleoporin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.03 | 0.373 | 9.5 | 0.738 | 1.35 | 0.972 | -0.059 | 0.0504 | 0.212 | 17.7 | 20.5 | 1282 | -- | -- |
| 63.03 | 0.37 | 9.5 | 0.73 | 1.35 | 0.965 | -0.0624 | -- | 0.21 | 17.7 | 20.5 | 1276 | -- | -- |
| 63.04 | 0.37 | 9.5 | 0.741 | 1.35 | 0.971 | -- | 0.0569 | 0.213 | 17.7 | 20.5 | 1276 | -- | -- |
| 63.04 | 0.37 | 9.5 | 0.731 | 1.35 | 0.963 | -- | -- | 0.21 | 17.7 | 20.51 | 1276 | -- | -- |
| 144.23 | 0.559 | 9.47 | 0.795 | -- | 1.01 | -- | 0.0999 | 0.208 | -- | 20.44 | 437 | -- | -- |
| 84.64 | 0.431 | 9.45 | 1.13 | 1.32 | -- | 0.163 | -- | 0.428 | 17.9 | -- | -- | -- | -- |
| 84.7 | 0.431 | 9.45 | 1.13 | 1.32 | -- | -- | -- | 0.429 | 17.9 | -- | -- | -- | -- |
| 102.77 | 0.472 | 9.51 | 0.837 | -- | 0.975 | -- | -- | 0.0679 | -- | 25.71 | 319 | -- | -- |
| 72 | 0.395 | 9.53 | -- | 1.36 | 1.37 | -- | -- | 0.0884 | 17.8 | 19.1 | 4188 | -- | -- |
| 175.23 | 0.619 | 9.43 | 1.09 | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
| 118.2 | 0.509 | 9.48 | -- | 1.3 | -- | -- | -- | 0.303 | 17.9 | -- | -- | -- | -- |
| 119.85 | 0.51 | 9.54 | -- | -- | 1.11 | -- | -- | -0.0749 | -- | 25.75 | 344 | -- | -- |
| 206.43 | 0.671 | 9.46 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.69 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 57.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 3 | 58.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 26 | 60.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 38 | 61.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 56 | 62.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 89 | 62.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 90 | 62.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 91 | 62.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 97 | 63.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 105 | 63.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 127 | 63.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 141 | 63.43 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 144 | 63.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 148 | 63.47 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 15 |
| 152 | 63.48 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 202 | 63.74 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 252 | 63.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 262 | 63.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 265 | 63.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 274 | 63.93 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 407 | 64.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 582 | 64.60 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 617 | 64.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 694 | 64.88 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 701 | 64.91 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 718 | 64.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 756 | 65.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 785 | 65.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 797 | 65.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 800 | 65.16 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 815 | 65.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 841 | 65.26 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 867 | 65.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 871 | 65.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 960 | 65.56 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |