Os01g0745400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec34-like protein family protein.
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Os01g0745400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sec34-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.54 | 0.427 | 3.12 | 0.94 | 0.461 | -0.49 | -0.517 | 8.63 | 0.0703 | 22.6 | 30.8 | 2411 | -- | -- |
| 83.72 | 0.426 | 3.3 | -0.467 | 0.454 | 0.579 | -0.482 | -- | -0.0665 | 22.4 | 25.62 | 5382 | -- | -- |
| 83.62 | 0.426 | 3.12 | 0.948 | 0.465 | -0.5 | -- | 8.66 | 0.0675 | 22.7 | 31.01 | 2379 | -- | -- |
| 83.33 | 0.425 | 3.3 | -0.36 | 0.352 | 0.594 | -- | -- | -0.0742 | 23.4 | 25.13 | 1001 | -- | -- |
| 96.64 | 0.458 | 3.11 | 0.918 | -- | -0.412 | -- | 8.67 | 0.0884 | -- | 31.09 | 2329 | -- | -- |
| 94.54 | 0.456 | 3.29 | -0.248 | 0.506 | -- | -0.402 | -- | -0.0163 | 22.9 | -- | -- | -- | -- |
| 95.21 | 0.457 | 3.29 | -0.232 | 0.508 | -- | -- | -- | -0.0152 | 23 | -- | -- | -- | -- |
| 88.8 | 0.439 | 3.3 | -0.448 | -- | 0.881 | -- | -- | -0.107 | -- | 24.4 | 919 | -- | -- |
| 87.23 | 0.435 | 3.29 | -- | 0.365 | 0.557 | -- | -- | -0.0161 | 23 | 25.3 | 1004 | -- | -- |
| 111.25 | 0.493 | 3.28 | -0.22 | -- | -- | -- | -- | -0.0115 | -- | -- | -- | -- | -- |
| 96.63 | 0.46 | 3.29 | -- | 0.506 | -- | -- | -- | 0.0106 | 23 | -- | -- | -- | -- |
| 93.75 | 0.451 | 3.29 | -- | -- | 0.782 | -- | -- | -0.0408 | -- | 24.6 | 910 | -- | -- |
| 112.53 | 0.495 | 3.27 | -- | -- | -- | -- | -- | 0.013 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.90 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 4 | 80.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 77 | 81.93 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 1 |
| 81 | 82.01 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 96 | 82.05 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 1 |
| 114 | 82.26 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 171 | 82.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 173 | 82.66 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 192 | 82.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 213 | 82.84 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 215 | 82.87 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 275 | 83.07 | temperature | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 278 | 83.08 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 279 | 83.08 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 282 | 83.10 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 309 | 83.15 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 321 | 83.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 361 | 83.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 383 | 83.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 392 | 83.30 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 406 | 83.34 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 10 |
| 407 | 83.34 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 420 | 83.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 430 | 83.42 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 6 |
| 433 | 83.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 437 | 83.46 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 442 | 83.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 448 | 83.49 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 12 |
| 463 | 83.52 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 475 | 83.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 477 | 83.55 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 542 | 83.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 18 |
| 555 | 83.58 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 557 | 83.59 | temperature | 30 | 1440 | > th | dose dependent | sin | 21 | NA |
| 566 | 83.59 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 571 | 83.60 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 599 | 83.61 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 715 | 83.62 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 729 | 83.62 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 18 |
| 766 | 83.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 820 | 83.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 840 | 83.67 | atmosphere | 1000 | 270 | > th | dose independent | sin | 15 | NA |
| 873 | 83.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 875 | 83.68 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 876 | 83.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 937 | 83.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |