Os01g0743500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytosolic NADP malic enzyme.
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Os01g0743500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytosolic NADP malic enzyme.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.16 | 0.532 | 3.81 | -1.37 | 0.478 | -0.647 | -0.675 | 2.26 | -0.475 | 2.91 | 20 | 1428 | -- | -- |
| 138.29 | 0.548 | 3.77 | -1.1 | 0.466 | -0.573 | -0.732 | -- | -0.378 | 3.04 | 20 | 1423 | -- | -- |
| 129.38 | 0.53 | 3.81 | -1.36 | 0.458 | -0.658 | -- | 2.36 | -0.469 | 2.99 | 20 | 1388 | -- | -- |
| 140.21 | 0.551 | 3.77 | -1.08 | 0.431 | -0.562 | -- | -- | -0.362 | 3.17 | 20 | 1387 | -- | -- |
| 139.34 | 0.55 | 3.8 | -1.35 | -- | -0.756 | -- | 2.38 | -0.468 | -- | 19.72 | 1348 | -- | -- |
| 149.9 | 0.574 | 3.74 | -1.02 | 0.49 | -- | -0.634 | -- | -0.226 | 2.84 | -- | -- | -- | -- |
| 151.26 | 0.576 | 3.74 | -1 | 0.487 | -- | -- | -- | -0.222 | 2.71 | -- | -- | -- | -- |
| 149.14 | 0.569 | 3.77 | -1.08 | -- | -0.673 | -- | -- | -0.366 | -- | 30 | 1312 | -- | -- |
| 167.35 | 0.602 | 3.75 | -- | 0.44 | -0.611 | -- | -- | -0.233 | 2.68 | 10 | 1431 | -- | -- |
| 165.06 | 0.6 | 3.74 | -0.981 | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
| 177.7 | 0.624 | 3.72 | -- | 0.467 | -- | -- | -- | -0.111 | 2.69 | -- | -- | -- | -- |
| 176.06 | 0.618 | 3.74 | -- | -- | -0.733 | -- | -- | -0.227 | -- | 9.998 | 1364 | -- | -- |
| 190.44 | 0.644 | 3.71 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 3 | 126.71 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 7 | 127.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 11 | 127.21 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 16 | 127.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 17 | 127.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 20 | 127.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 22 | 127.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 37 | 127.73 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 50 | 127.94 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 51 | 127.94 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 55 | 127.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 59 | 127.96 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 62 | 127.96 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 106 | 128.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 114 | 128.30 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 127 | 128.30 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 132 | 128.31 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 133 | 128.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 134 | 128.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 296 | 128.54 | radiation | 20 | 1440 | < th | dose independent | sin | 20 | NA |
| 307 | 128.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 340 | 128.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 343 | 128.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 345 | 128.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 346 | 128.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 356 | 128.72 | radiation | 40 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 372 | 128.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 375 | 128.78 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 378 | 128.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 394 | 128.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 491 | 128.86 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 513 | 128.88 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 521 | 128.89 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 582 | 129.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 630 | 129.09 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 642 | 129.10 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 723 | 129.41 | radiation | 1 | 1440 | > th | dose dependent | sin | 14 | NA |
| 926 | 129.73 | radiation | 40 | 1440 | < th | dose dependent | sin | 14 | NA |
| 993 | 129.89 | radiation | 1 | 1440 | > th | dose dependent | rect. | 14 | 2 |