Os01g0743200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os01g0743200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.61 | 0.594 | 3.13 | 0.423 | 0.0981 | -0.609 | -1.01 | -0.507 | 0.0759 | 5.55 | 19.21 | 2242 | -- | -- |
| 159.82 | 0.589 | 3.12 | 0.569 | 0.0961 | -0.641 | -0.995 | -- | 0.117 | 5.37 | 18.8 | 2240 | -- | -- |
| 161.91 | 0.593 | 3.14 | 0.341 | 0.145 | -0.563 | -- | -0.73 | 0.0509 | 6.59 | 18.9 | 2505 | -- | -- |
| 162.18 | 0.593 | 3.12 | 0.562 | 0.111 | -0.624 | -- | -- | 0.113 | 6.51 | 18.8 | 2317 | -- | -- |
| 162.54 | 0.594 | 3.13 | 0.414 | -- | -0.613 | -- | -0.527 | 0.0791 | -- | 19.12 | 2190 | -- | -- |
| 170.13 | 0.611 | 3.15 | 0.328 | 0.127 | -- | -0.957 | -- | -0.0249 | 5.86 | -- | -- | -- | -- |
| 171.55 | 0.613 | 3.14 | 0.325 | 0.167 | -- | -- | -- | -0.0196 | 8.73 | -- | -- | -- | -- |
| 162.66 | 0.594 | 3.11 | 0.566 | -- | -0.641 | -- | -- | 0.124 | -- | 18.9 | 2121 | -- | -- |
| 168.79 | 0.605 | 3.13 | -- | 0.146 | -0.425 | -- | -- | 0.0211 | 6.37 | 20.9 | 1128 | -- | -- |
| 173.14 | 0.615 | 3.15 | 0.325 | -- | -- | -- | -- | -0.0183 | -- | -- | -- | -- | -- |
| 174.33 | 0.618 | 3.15 | -- | 0.168 | -- | -- | -- | -0.0558 | 8.59 | -- | -- | -- | -- |
| 169.42 | 0.606 | 3.14 | -- | -- | -0.464 | -- | -- | 0.0129 | -- | 20.6 | 854 | -- | -- |
| 175.92 | 0.619 | 3.15 | -- | -- | -- | -- | -- | -0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.28 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 2 | 151.31 | wind | 5.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 13 | 152.91 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 15 | 152.95 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 25 | 153.73 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 29 | 154.24 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 32 | 154.44 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 45 | 154.94 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 20 |
| 47 | 154.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 48 | 154.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 52 | 155.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 57 | 155.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 89 | 156.39 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 20 |
| 95 | 156.69 | wind | 7.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 114 | 157.25 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 115 | 157.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 126 | 157.44 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 141 | 157.69 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 145 | 157.75 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 157 | 157.97 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 160 | 157.99 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 184 | 158.24 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 187 | 158.27 | wind | 5.0 | 1440 | > th | dose independent | rect. | 19 | 15 |
| 193 | 158.31 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 205 | 158.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 208 | 158.44 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 214 | 158.51 | wind | 1.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 218 | 158.54 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 220 | 158.57 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 224 | 158.58 | temperature | 20.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 227 | 158.62 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 231 | 158.63 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 253 | 158.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 256 | 158.70 | wind | 5.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 266 | 158.75 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 269 | 158.76 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 272 | 158.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 274 | 158.77 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 289 | 158.82 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 296 | 158.83 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 297 | 158.84 | wind | 5.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 302 | 158.85 | wind | 5.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 310 | 158.86 | wind | 5.0 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 324 | 158.90 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 342 | 158.98 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 346 | 159.00 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 348 | 159.01 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 354 | 159.02 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 364 | 159.05 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 377 | 159.08 | wind | 7.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 390 | 159.11 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 414 | 159.17 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 420 | 159.18 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 424 | 159.20 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 430 | 159.20 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 431 | 159.21 | wind | 5.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 434 | 159.21 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 477 | 159.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 519 | 159.33 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 528 | 159.35 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 12 |
| 532 | 159.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 546 | 159.37 | wind | 5.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 567 | 159.41 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 573 | 159.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 579 | 159.43 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 589 | 159.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 601 | 159.46 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 602 | 159.46 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 622 | 159.50 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 625 | 159.51 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 631 | 159.51 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 664 | 159.55 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 681 | 159.57 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 682 | 159.57 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 692 | 159.57 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 19 | 15 |
| 711 | 159.59 | wind | 5.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 788 | 159.66 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 899 | 159.75 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 937 | 159.79 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 941 | 159.79 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 962 | 159.81 | temperature | 30.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 994 | 159.83 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 13 |