Os01g0742400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0742400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.42 | 0.732 | 5.82 | 1.68 | 0.353 | 0.0713 | -0.488 | 6.18 | 0.342 | 3.79 | 998.4 | 12149 | -- | -- |
| 259.52 | 0.75 | 5.92 | 1.59 | 0.296 | 1.16 | 0.146 | -- | 0.335 | 4.76 | 998.9 | 11631 | -- | -- |
| 242.82 | 0.726 | 5.82 | 1.7 | 0.362 | 0.0153 | -- | 6.41 | 0.346 | 3.54 | 999 | 12075 | -- | -- |
| 255.43 | 0.744 | 5.91 | 1.37 | 0.365 | 1.32 | -- | -- | 0.406 | 3.38 | 999 | 11826 | -- | -- |
| 249.62 | 0.736 | 5.81 | 1.73 | -- | -0.0603 | -- | 6.75 | 0.347 | -- | 999 | 12070 | -- | -- |
| 296.89 | 0.808 | 5.93 | 1.62 | 0.34 | -- | -0.556 | -- | 0.272 | 3.79 | -- | -- | -- | -- |
| 297.72 | 0.808 | 5.93 | 1.63 | 0.335 | -- | -- | -- | 0.275 | 3.36 | -- | -- | -- | -- |
| 262.62 | 0.755 | 5.9 | 1.36 | -- | 1.32 | -- | -- | 0.409 | -- | 999 | 11751 | -- | -- |
| 299.76 | 0.806 | 5.92 | -- | 0.393 | 1.63 | -- | -- | 0.299 | 3.3 | 999 | 12342 | -- | -- |
| 304.06 | 0.815 | 5.93 | 1.64 | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
| 367.53 | 0.897 | 5.97 | -- | 0.368 | -- | -- | -- | 0.094 | 3.36 | -- | -- | -- | -- |
| 308.48 | 0.818 | 5.92 | -- | -- | 1.62 | -- | -- | 0.303 | -- | 999 | 12169 | -- | -- |
| 375.16 | 0.904 | 5.97 | -- | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 5 | 241.21 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 8 | 241.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 18 | 242.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 20 | 242.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 21 | 242.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 40 | 243.70 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 46 | 243.93 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 52 | 244.26 | wind | 5.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 57 | 244.49 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 61 | 244.61 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 7 |
| 70 | 244.87 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 76 | 244.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 81 | 245.06 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 99 | 245.26 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 12 |
| 104 | 245.33 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 127 | 245.61 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 135 | 245.78 | wind | 5.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 149 | 245.98 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 183 | 246.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 225 | 246.64 | wind | 5.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 228 | 246.65 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 293 | 247.12 | wind | 5.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 308 | 247.29 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 314 | 247.32 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 318 | 247.36 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 330 | 247.41 | wind | 5.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 350 | 247.50 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 14 | 15 |
| 403 | 247.63 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 21 | 19 |
| 449 | 247.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 549 | 247.91 | wind | 5.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 587 | 247.98 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 665 | 248.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 870 | 248.68 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 904 | 248.76 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 13 | 12 |
| 921 | 248.81 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 931 | 248.84 | wind | 5.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 944 | 248.86 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 970 | 248.91 | wind | 5.0 | 14400 | < th | dose independent | rect. | 17 | 1 |