Os01g0742000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0742000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.21 | 0.558 | 9.39 | 2.24 | 3.6 | -0.559 | -0.133 | 0.13 | 0.122 | 18.6 | 20.9 | 20 | -- | -- |
| 140.75 | 0.557 | 9.39 | 2.22 | 3.59 | -0.567 | -0.0966 | -- | 0.119 | 18.6 | 21 | 16 | -- | -- |
| 141.25 | 0.554 | 9.39 | 2.24 | 3.6 | -0.56 | -- | 0.122 | 0.121 | 18.6 | 20.9 | 20 | -- | -- |
| 140.78 | 0.556 | 9.39 | 2.22 | 3.59 | -0.568 | -- | -- | 0.119 | 18.6 | 21.01 | 16 | -- | -- |
| 814.41 | 1.34 | 9.32 | 2.13 | -- | -0.428 | -- | 0.133 | 0.0193 | -- | 20.9 | 20 | -- | -- |
| 156.22 | 0.586 | 9.42 | 2.08 | 3.57 | -- | -0.137 | -- | -0.00722 | 18.8 | -- | -- | -- | -- |
| 156.27 | 0.585 | 9.42 | 2.08 | 3.57 | -- | -- | -- | -0.00759 | 18.8 | -- | -- | -- | -- |
| 813 | 1.33 | 9.32 | 2.11 | -- | -0.457 | -- | -- | 0.0217 | -- | 21.1 | 18 | -- | -- |
| 266.58 | 0.765 | 9.46 | -- | 3.56 | -0.272 | -- | -- | -0.186 | 18.7 | 21.01 | 16 | -- | -- |
| 824.17 | 1.34 | 9.35 | 2 | -- | -- | -- | -- | -0.0775 | -- | -- | -- | -- | -- |
| 270.25 | 0.769 | 9.47 | -- | 3.55 | -- | -- | -- | -0.239 | 18.8 | -- | -- | -- | -- |
| 555.92 | 1.1 | 9.51 | -- | -- | 2.45 | -- | -- | -0.812 | -- | 26.6 | 392 | -- | -- |
| 929.58 | 1.42 | 9.4 | -- | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 22 | 130.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 25 | 130.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 34 | 131.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 35 | 131.56 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 16 |
| 55 | 132.53 | temperature | 25 | 10 | < th | dose dependent | sin | 10 | NA |
| 56 | 132.54 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 11 |
| 79 | 132.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 12 |
| 108 | 133.43 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 9 |
| 132 | 133.71 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 7 |
| 163 | 133.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 169 | 134.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 174 | 134.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 183 | 134.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 186 | 134.15 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 6 |
| 194 | 134.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 197 | 134.29 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 17 |
| 211 | 134.40 | temperature | 20 | 30 | < th | dose independent | sin | 11 | NA |
| 214 | 134.41 | temperature | 20 | 30 | > th | dose independent | sin | 10 | NA |
| 242 | 134.73 | temperature | 20 | 30 | < th | dose independent | rect. | 20 | 14 |
| 293 | 135.13 | temperature | 20 | 30 | < th | dose independent | rect. | 14 | 20 |
| 396 | 135.75 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 13 |
| 405 | 135.83 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 5 |
| 572 | 136.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 622 | 136.69 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 834 | 137.27 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 3 |
| 894 | 137.43 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 906 | 137.46 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 8 |
| 980 | 137.66 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 10 |