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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0740000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0171) R2 : 0.000554
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0181 (0.036) R2dN8 : 0.000715 R2N8 : 0.000554
σ : 0.322
deviance : 47.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.24 0.316 3.13 0.139 0.265 0.229 -0.884 -1.07 0.0177 11.4 0.2498 126 -- --
46.2 0.317 3.12 0.0936 0.296 0.246 0.285 -- 0.0115 11.7 0.05996 153 -- --
45.71 0.315 3.13 0.123 0.301 0.253 -- -0.393 0.0164 11.7 0.0004241 153 -- --
46.5 0.318 3.13 0.0963 0.29 0.251 -- -- 0.00925 11.8 0.05488 153 -- --
46.8 0.319 3.14 0.0614 -- 0.0968 -- -0.411 -0.00949 -- 12.93 593 -- --
46.94 0.321 3.14 0.0563 0.0851 -- -0.302 -- -0.015 4.39 -- -- -- --
47.08 0.321 3.14 0.0594 0.0964 -- -- -- -0.0134 6.14 -- -- -- --
46.81 0.319 3.14 0.0767 -- 0.172 -- -- 0.0135 -- 0.06 846 -- --
46.69 0.318 3.13 -- 0.289 0.255 -- -- -0.00151 11.9 0.0615 153 -- --
47.56 0.322 3.14 0.0621 -- -- -- -- -0.0112 -- -- -- -- --
47.17 0.321 3.14 -- 0.0973 -- -- -- -0.02 6.1 -- -- -- --
46.96 0.319 3.14 -- -- 0.142 -- -- -0.00133 -- 0.1099 888 -- --
47.67 0.322 3.14 -- -- -- -- -- -0.0181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.02 atmosphere 1005.0 30 > th dose dependent rect. 2 3
3 43.13 temperature 25.0 90 > th dose independent rect. 2 2
4 43.13 temperature 25.0 90 > th dose dependent rect. 2 3
5 43.15 temperature 25.0 90 > th dose independent rect. 1 4
7 43.20 temperature 25.0 270 > th dose dependent rect. 2 1
18 43.66 humidity 90.0 10 < th dose independent rect. 3 2
19 43.71 humidity 90.0 10 < th dose dependent rect. 4 1
28 43.98 temperature 10.0 30 > th dose dependent rect. 5 21
37 44.20 temperature 15.0 30 > th dose independent rect. 5 21
49 44.35 temperature 30.0 10 < th dose dependent rect. 4 1
54 44.38 temperature 10.0 30 > th dose dependent rect. 5 23
55 44.39 atmosphere 1005.0 30 > th dose independent rect. 2 3
60 44.42 temperature 25.0 30 < th dose independent rect. 4 1
66 44.45 wind 5.0 10 < th dose independent rect. 4 1
69 44.45 temperature 15.0 10 > th dose independent rect. 5 23
78 44.47 wind 9.0 10 < th dose dependent rect. 4 1
81 44.48 atmosphere 1005.0 10 > th dose independent rect. 4 1
83 44.49 radiation 1.0 10 < th dose dependent rect. 4 1
85 44.50 temperature 10.0 10 > th dose independent rect. 4 1
88 44.50 humidity 50.0 10 > th dose independent rect. 4 1
91 44.50 atmosphere 995.0 10 > th dose independent rect. 4 1
92 44.50 atmosphere 1010.0 10 < th dose independent rect. 4 1
94 44.50 radiation 1.0 10 < th dose independent rect. 4 1
111 44.53 precipitation 0.1 10 < th dose independent rect. 4 1
112 44.53 precipitation 0.1 10 < th dose dependent rect. 4 1
113 44.54 humidity 50.0 10 > th dose dependent rect. 4 1
128 44.60 atmosphere 1015.0 30 < th dose dependent rect. 4 1
162 44.63 temperature 10.0 10 > th dose dependent rect. 4 1
166 44.65 wind 1.0 10 > th dose independent rect. 4 1
172 44.68 temperature 25.0 90 > th dose independent rect. 4 1
175 44.69 temperature 15.0 270 > th dose independent rect. 3 22
178 44.70 temperature 25.0 90 > th dose dependent rect. 4 1
183 44.72 temperature 15.0 1440 > th dose independent rect. 21 1
190 44.73 temperature 30.0 1440 < th dose independent rect. 21 1
194 44.73 humidity 50.0 1440 > th dose independent rect. 21 1
200 44.73 atmosphere 995.0 1440 > th dose independent rect. 21 1
201 44.73 radiation 1.0 1440 < th dose independent rect. 21 1
222 44.73 temperature 10.0 1440 > th dose independent rect. 22 23
229 44.74 temperature 10.0 30 > th dose dependent rect. 3 23
231 44.75 precipitation 0.1 30 < th dose independent rect. 5 23
234 44.75 radiation 30.0 1440 < th dose dependent rect. 21 1
242 44.75 precipitation 0.1 30 < th dose dependent rect. 5 23
250 44.76 wind 9.0 30 < th dose independent rect. 5 23
254 44.77 wind 1.0 30 > th dose dependent rect. 4 1
259 44.78 wind 7.0 1440 < th dose independent rect. 5 1
262 44.78 temperature 10.0 1440 > th dose independent rect. 5 1
265 44.78 temperature 30.0 1440 < th dose independent rect. 5 1
269 44.78 humidity 50.0 1440 > th dose independent rect. 5 1
278 44.78 atmosphere 995.0 1440 > th dose independent rect. 5 1
279 44.78 atmosphere 1015.0 1440 < th dose independent rect. 5 1
280 44.78 radiation 20.0 1440 < th dose independent rect. 5 1
289 44.78 temperature 10.0 1440 > th dose independent rect. 6 23
300 44.80 temperature 25.0 30 > th dose independent rect. 20 1
302 44.80 atmosphere 1005.0 30 > th dose dependent rect. 20 1
304 44.81 wind 3.0 30 < th dose independent rect. 2 3
307 44.81 temperature 25.0 720 > th dose dependent rect. 5 3
310 44.82 wind 3.0 30 > th dose independent rect. 20 1
311 44.82 humidity 80.0 30 > th dose independent rect. 20 1
320 44.84 humidity 90.0 720 < th dose independent rect. 1 3
322 44.85 temperature 20.0 30 > th dose dependent rect. 20 1
333 44.86 humidity 90.0 90 < th dose independent rect. 5 20
364 44.90 atmosphere 1005.0 30 > th dose independent rect. 20 1
365 44.90 wind 5.0 30 < th dose dependent rect. 2 3
368 44.91 wind 1.0 30 > th dose dependent rect. 20 1
370 44.91 humidity 70.0 30 > th dose dependent rect. 20 1
374 44.91 radiation 1.0 90 < th dose dependent rect. 1 23
375 44.92 humidity 90.0 30 < th dose independent rect. 20 1
383 44.93 wind 5.0 30 < th dose independent rect. 20 1
390 44.94 wind 9.0 1440 < th dose independent rect. 21 1
397 44.95 temperature 10.0 30 > th dose independent rect. 20 1
399 44.95 temperature 30.0 30 < th dose independent rect. 20 1
400 44.95 humidity 50.0 30 > th dose independent rect. 20 1
404 44.95 atmosphere 1010.0 30 < th dose independent rect. 20 1
406 44.95 radiation 1.0 30 < th dose independent rect. 20 1
411 44.95 precipitation 0.1 30 < th dose independent rect. 20 1
413 44.95 temperature 10.0 30 > th dose independent rect. 21 23
414 44.95 radiation 1.0 30 < th dose dependent rect. 20 1
419 44.95 precipitation 0.1 30 < th dose dependent rect. 20 1
424 44.97 wind 9.0 1440 < th dose independent rect. 3 3
425 44.97 temperature 10.0 1440 > th dose independent rect. 3 3
428 44.97 temperature 30.0 1440 < th dose independent rect. 3 3
432 44.97 humidity 50.0 1440 > th dose independent rect. 3 3
441 44.97 atmosphere 995.0 1440 > th dose independent rect. 3 3
442 44.97 radiation 20.0 1440 < th dose independent rect. 3 3
453 44.97 temperature 10.0 1440 > th dose independent rect. 6 21
456 44.97 atmosphere 995.0 10 > th dose independent rect. 5 23
460 44.98 wind 9.0 30 < th dose dependent rect. 20 1
466 44.99 humidity 60.0 1440 < th dose independent rect. 18 1
485 44.99 humidity 60.0 1440 < th dose dependent rect. 18 1
515 45.03 humidity 60.0 1440 > th dose independent rect. 18 2
524 45.04 humidity 60.0 1440 > th dose independent rect. 18 4
527 45.04 humidity 60.0 1440 > th dose independent rect. 18 9
538 45.05 wind 7.0 720 < th dose independent rect. 15 14
555 45.07 atmosphere 1000.0 30 > th dose independent rect. 5 21
586 45.09 radiation 1.0 10 < th dose independent rect. 2 12
598 45.09 humidity 80.0 4320 < th dose dependent rect. 1 1
599 45.09 radiation 1.0 30 < th dose dependent rect. 2 12
637 45.10 temperature 10.0 10 > th dose dependent rect. 16 10
646 45.11 temperature 25.0 1440 < th dose independent rect. 1 1
667 45.11 wind 9.0 30 < th dose independent rect. 5 21
694 45.12 atmosphere 1015.0 30 < th dose dependent rect. 20 1
718 45.13 temperature 10.0 30 > th dose independent rect. 2 3
720 45.13 temperature 30.0 30 < th dose independent rect. 2 3
721 45.13 humidity 50.0 30 > th dose independent rect. 2 3
726 45.13 atmosphere 995.0 30 > th dose independent rect. 2 3
727 45.13 atmosphere 1010.0 30 < th dose independent rect. 2 3
729 45.13 radiation 1.0 30 < th dose independent rect. 2 3
734 45.13 precipitation 0.1 30 < th dose independent rect. 2 3
745 45.13 temperature 15.0 10 > th dose independent rect. 16 10
756 45.13 precipitation 0.1 30 < th dose independent rect. 5 21
759 45.13 radiation 20.0 30 < th dose dependent rect. 2 3
762 45.13 precipitation 0.1 30 < th dose dependent rect. 2 3
766 45.13 precipitation 0.1 30 < th dose dependent rect. 5 21
777 45.14 radiation 1.0 30 < th dose independent rect. 2 10
807 45.14 radiation 1.0 30 < th dose dependent rect. 2 10
829 45.15 radiation 1.0 30 < th dose independent rect. 2 6
840 45.15 radiation 1.0 30 < th dose dependent rect. 2 6
852 45.16 humidity 90.0 30 < th dose dependent rect. 20 1
867 45.17 radiation 1.0 90 < th dose independent rect. 1 23
900 45.17 temperature 10.0 30 > th dose dependent rect. 21 23
920 45.18 temperature 15.0 10 > th dose independent rect. 14 12
943 45.18 temperature 10.0 30 > th dose dependent rect. 5 15
963 45.19 humidity 50.0 1440 > th dose independent rect. 16 16
968 45.19 temperature 30.0 30 < th dose dependent rect. 20 1