Os01g0739300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0739300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.46 | 0.591 | 6.59 | -0.0212 | 0.854 | -1.14 | -0.279 | -1.66 | 0.0803 | 21.1 | 20.82 | 3155 | -- | -- |
| 159.59 | 0.588 | 6.53 | 0.202 | 0.913 | -0.833 | -0.277 | -- | 0.18 | 21.2 | 22 | 2196 | -- | -- |
| 158.04 | 0.586 | 6.56 | -0.00968 | 0.862 | -1.04 | -- | -1.3 | 0.121 | 21.1 | 21.4 | 3200 | -- | -- |
| 159.77 | 0.589 | 6.53 | 0.159 | 0.904 | -0.815 | -- | -- | 0.17 | 21.2 | 22.1 | 2196 | -- | -- |
| 199.79 | 0.658 | 6.55 | -0.0353 | -- | -0.97 | -- | -1.22 | 0.0967 | -- | 21.5 | 3039 | -- | -- |
| 181.93 | 0.632 | 6.59 | -0.2 | 0.844 | -- | -0.288 | -- | -0.107 | 21.1 | -- | -- | -- | -- |
| 182.22 | 0.632 | 6.59 | -0.189 | 0.846 | -- | -- | -- | -0.107 | 21 | -- | -- | -- | -- |
| 202.47 | 0.663 | 6.5 | 0.215 | -- | -0.809 | -- | -- | 0.176 | -- | 22.1 | 3030 | -- | -- |
| 160.37 | 0.59 | 6.53 | -- | 0.905 | -0.768 | -- | -- | 0.154 | 21.1 | 22.1 | 2156 | -- | -- |
| 223.35 | 0.698 | 6.56 | -0.188 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 183.16 | 0.633 | 6.58 | -- | 0.846 | -- | -- | -- | -0.0859 | 21 | -- | -- | -- | -- |
| 203.21 | 0.666 | 6.53 | -- | -- | -0.559 | -- | -- | 0.0498 | -- | 22.1 | 3030 | -- | -- |
| 224.28 | 0.699 | 6.56 | -- | -- | -- | -- | -- | -0.0912 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 158.46 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 5 | 159.18 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 14 | 159.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 24 | 159.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 27 | 159.84 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 36 | 159.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 59 | 160.11 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 62 | 160.12 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 70 | 160.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 6 |
| 85 | 160.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 101 | 160.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 146 | 160.46 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 154 | 160.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 168 | 160.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 171 | 160.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 187 | 160.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 205 | 160.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 223 | 160.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 282 | 160.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 293 | 160.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 296 | 160.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 316 | 160.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 342 | 160.76 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 357 | 160.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 433 | 160.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 618 | 161.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 635 | 161.09 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 828 | 161.38 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 926 | 161.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 963 | 161.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 991 | 161.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |