Os01g0738800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0738800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.63 | 0.357 | 10.2 | 0.67 | 0.267 | -0.755 | 1.01 | 1.21 | -0.0624 | 4.59 | 9.793 | 1438 | -- | -- |
| 60.4 | 0.362 | 10.2 | 0.773 | 0.263 | -0.718 | 1.02 | -- | -0.0482 | 4.71 | 10.25 | 1440 | -- | -- |
| 60.28 | 0.362 | 10.2 | 0.668 | 0.284 | -0.78 | -- | 1.25 | -0.0668 | 4.13 | 9.747 | 1450 | -- | -- |
| 63.06 | 0.37 | 10.2 | 0.777 | 0.266 | -0.718 | -- | -- | -0.0429 | 4.62 | 10.57 | 1444 | -- | -- |
| 64.22 | 0.373 | 10.2 | 0.667 | -- | -0.789 | -- | 1.15 | -0.069 | -- | 9.752 | 1428 | -- | -- |
| 74.66 | 0.405 | 10.1 | 0.803 | 0.275 | -- | 1.13 | -- | 0.113 | 4.43 | -- | -- | -- | -- |
| 78.13 | 0.414 | 10.1 | 0.794 | 0.284 | -- | -- | -- | 0.107 | 4.69 | -- | -- | -- | -- |
| 66.6 | 0.38 | 10.2 | 0.77 | -- | -0.71 | -- | -- | -0.0352 | -- | 11.17 | 1426 | -- | -- |
| 76.05 | 0.406 | 10.2 | -- | 0.275 | -0.743 | -- | -- | -0.161 | 4.71 | 17.33 | 1440 | -- | -- |
| 82.41 | 0.424 | 10.1 | 0.805 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 94.76 | 0.455 | 10.1 | -- | 0.299 | -- | -- | -- | 0.0189 | 4.61 | -- | -- | -- | -- |
| 79.66 | 0.416 | 10.2 | -- | -- | -0.738 | -- | -- | -0.158 | -- | 23.13 | 1416 | -- | -- |
| 99.51 | 0.466 | 10.1 | -- | -- | -- | -- | -- | 0.0254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 5 | 55.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 6 | 55.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 11 | 55.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 43 | 56.05 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 50 | 56.16 | wind | 7 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 51 | 56.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 55 | 56.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 59 | 56.29 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 65 | 56.32 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 72 | 56.36 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 80 | 56.41 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 81 | 56.42 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 94 | 56.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 5 |
| 102 | 56.57 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 114 | 56.67 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 119 | 56.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 121 | 56.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 133 | 56.79 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 141 | 56.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 154 | 56.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 169 | 57.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 184 | 57.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 10 |
| 253 | 57.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 271 | 57.31 | radiation | 10 | 1440 | < th | dose dependent | sin | 1 | NA |
| 275 | 57.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 352 | 57.50 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 369 | 57.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 370 | 57.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 375 | 57.55 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 437 | 57.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 440 | 57.64 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 462 | 57.66 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 483 | 57.71 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 492 | 57.75 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 494 | 57.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 525 | 57.80 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 535 | 57.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 588 | 57.89 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 597 | 57.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 627 | 57.93 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 665 | 57.99 | radiation | 10 | 1440 | > th | dose independent | sin | 7 | NA |
| 778 | 58.08 | wind | 3 | 43200 | > th | dose independent | sin | 8 | NA |
| 861 | 58.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 887 | 58.22 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 896 | 58.24 | wind | 1 | 43200 | > th | dose dependent | sin | 8 | NA |
| 902 | 58.25 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 955 | 58.31 | wind | 3 | 43200 | < th | dose independent | sin | 8 | NA |
| 961 | 58.32 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 985 | 58.35 | wind | 9 | 43200 | < th | dose dependent | sin | 8 | NA |