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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0738300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0193) R2 : 0.00279
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.046 (0.0407) R2dN8 : 0.00361 R2N8 : 0.00279
σ : 0.364
deviance : 60.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.47 0.344 3.22 -0.0763 0.264 0.00561 -0.245 1.29 -0.0572 6.73 69.99 6599 -- --
55.76 0.348 3.22 -0.117 0.285 0.117 -0.344 -- -0.0931 6.72 73.86 8313 -- --
53.62 0.341 3.22 -0.0795 0.262 -0.0044 -- 1.32 -0.0554 6.66 69.86 6563 -- --
56.1 0.351 3.21 -0.16 0.306 0.0734 -- -- -0.0698 5.77 73.86 8313 -- --
56.97 0.352 3.22 -0.0597 -- -0.119 -- 1.42 -0.0284 -- 70.99 6500 -- --
56.01 0.351 3.21 -0.144 0.271 -- -0.373 -- -0.0683 6.75 -- -- -- --
56.36 0.352 3.21 -0.151 0.271 -- -- -- -0.0675 6.58 -- -- -- --
59.97 0.361 3.22 -0.142 -- 0.0857 -- -- -0.0731 -- 74 8507 -- --
55.96 0.348 3.21 -- 0.289 0.212 -- -- -0.0406 6.43 64.36 33503 -- --
60.17 0.362 3.22 -0.144 -- -- -- -- -0.062 -- -- -- -- --
56.96 0.353 3.21 -- 0.269 -- -- -- -0.0507 6.61 -- -- -- --
59.73 0.36 3.21 -- -- 0.229 -- -- -0.0495 -- 65 33135 -- --
60.72 0.364 3.21 -- -- -- -- -- -0.046 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.90 humidity 90.0 90 < th dose dependent rect. 2 6
2 52.11 radiation 10.0 10 > th dose independent rect. 7 1
18 52.27 radiation 10.0 10 > th dose independent rect. 16 16
24 52.54 atmosphere 1000.0 10 > th dose dependent rect. 2 7
28 52.65 humidity 90.0 10 < th dose dependent rect. 7 1
33 52.76 radiation 10.0 10 > th dose dependent rect. 16 16
37 52.85 radiation 1.0 30 > th dose dependent rect. 7 1
38 52.86 humidity 90.0 90 < th dose independent rect. 2 6
40 52.89 humidity 80.0 10 < th dose independent rect. 5 3
58 52.91 humidity 80.0 10 < th dose independent rect. 23 9
65 52.96 atmosphere 1005.0 30 > th dose dependent rect. 7 1
69 53.00 humidity 80.0 10 < th dose independent rect. 7 1
74 53.04 atmosphere 1005.0 30 > th dose independent rect. 7 1
75 53.05 atmosphere 1000.0 30 > th dose independent rect. 9 17
82 53.10 wind 5.0 30 < th dose independent rect. 2 7
99 53.22 wind 3.0 14400 > th dose independent rect. 19 1
117 53.24 humidity 60.0 4320 > th dose independent rect. 12 1
122 53.27 atmosphere 995.0 4320 > th dose independent rect. 5 1
141 53.29 wind 9.0 30 < th dose dependent rect. 2 7
146 53.32 humidity 50.0 4320 > th dose independent rect. 3 7
148 53.32 atmosphere 995.0 30 > th dose dependent rect. 9 17
166 53.34 atmosphere 1005.0 30 > th dose independent rect. 2 7
176 53.36 precipitation 0.1 10 < th dose independent rect. 2 7
180 53.36 precipitation 0.1 10 < th dose dependent rect. 2 7
181 53.37 wind 9.0 4320 < th dose independent rect. 3 6
184 53.38 humidity 60.0 4320 < th dose independent rect. 12 1
191 53.39 wind 3.0 14400 < th dose dependent rect. 18 2
192 53.40 temperature 25.0 10 < th dose independent rect. 2 7
223 53.43 wind 3.0 14400 < th dose independent rect. 19 1
231 53.45 temperature 10.0 30 > th dose independent rect. 2 7
233 53.45 temperature 10.0 1440 > th dose independent rect. 3 7
237 53.45 humidity 50.0 30 > th dose independent rect. 2 7
239 53.45 atmosphere 995.0 30 > th dose independent rect. 2 7
240 53.45 atmosphere 995.0 1440 > th dose independent rect. 3 7
241 53.45 atmosphere 1015.0 30 < th dose independent rect. 2 7
242 53.45 temperature 10.0 30 > th dose independent rect. 9 17
243 53.45 temperature 10.0 1440 > th dose independent rect. 10 17
264 53.48 precipitation 0.1 10 < th dose independent rect. 9 17
266 53.48 precipitation 0.1 10 < th dose dependent rect. 9 17
271 53.49 temperature 30.0 30 < th dose dependent rect. 2 7
291 53.52 radiation 40.0 10 < th dose dependent rect. 9 17
295 53.54 wind 1.0 10 > th dose independent rect. 8 23
300 53.55 radiation 40.0 10 < th dose independent rect. 9 17
337 53.57 humidity 70.0 4320 < th dose independent rect. 10 1
340 53.57 wind 9.0 30 < th dose independent rect. 9 17
401 53.68 humidity 80.0 10 < th dose dependent rect. 20 12
406 53.69 radiation 10.0 90 > th dose independent rect. 17 15
409 53.70 humidity 50.0 30 > th dose independent rect. 9 17
425 53.72 humidity 60.0 4320 < th dose independent rect. 12 7
511 53.76 humidity 60.0 4320 > th dose independent rect. 11 8
527 53.76 temperature 20.0 270 < th dose dependent rect. 3 2
537 53.77 wind 5.0 30 < th dose independent rect. 2 11
545 53.77 wind 1.0 10 > th dose independent rect. 9 17
604 53.78 humidity 70.0 4320 < th dose dependent rect. 12 1
616 53.78 wind 3.0 14400 < th dose dependent rect. 10 10
634 53.80 radiation 10.0 10 < th dose dependent rect. 6 20
638 53.81 radiation 40.0 30 < th dose independent rect. 2 7
699 53.84 humidity 60.0 4320 < th dose independent sin 17 NA
702 53.84 humidity 50.0 14400 > th dose independent rect. 14 4
721 53.84 humidity 60.0 14400 < th dose dependent rect. 14 3
740 53.85 temperature 20.0 270 < th dose independent rect. 3 2
743 53.85 wind 3.0 14400 < th dose independent rect. 16 4
775 53.85 humidity 70.0 4320 < th dose independent rect. 18 21
843 53.87 wind 9.0 4320 < th dose independent rect. 3 3
879 53.87 humidity 50.0 14400 > th dose independent rect. 14 17
882 53.87 humidity 70.0 4320 < th dose independent rect. 18 19
883 53.87 humidity 90.0 14400 < th dose dependent rect. 12 1
898 53.87 humidity 70.0 4320 < th dose dependent rect. 12 8
934 53.88 humidity 60.0 4320 > th dose independent sin 18 NA
952 53.88 radiation 10.0 10 < th dose dependent rect. 10 16