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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0738000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0162) R2 : 0.538
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.966 (0.042) R2dC : 0.54 R2C : 0.535
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0513 (0.0341) R2dN8 : 0.00296 R2N8 : -0.00233
σ : 0.305
deviance : 42.61
__
_____
C
peak time of C : 19.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.94 0.239 10.4 0.712 0.97 0.19 0.00593 -1.28 0.16 19.1 9.988 1483 -- --
28.56 0.249 10.4 0.716 0.972 0.175 -0.0315 -- 0.167 19.1 9.987 1480 -- --
25.93 0.237 10.4 0.711 0.969 0.186 -- -1.31 0.159 19.1 9.981 1502 -- --
28.53 0.249 10.4 0.727 0.954 0.179 -- -- 0.158 19.1 9.998 1468 -- --
75.12 0.406 10.4 0.64 -- 0.183 -- -0.389 0.0907 -- 9.97 1502 -- --
29.38 0.254 10.4 0.708 0.973 -- -0.034 -- 0.13 19.2 -- -- -- --
29.38 0.254 10.4 0.709 0.973 -- -- -- 0.13 19.2 -- -- -- --
37.51 0.285 10.3 0.673 -- -1.42 -- -- 0.293 -- 0.08468 833 -- --
39.49 0.293 10.4 -- 0.923 0.201 -- -- 0.128 19.1 9.991 16039 -- --
79.45 0.416 10.4 0.691 -- -- -- -- 0.113 -- -- -- -- --
42.61 0.305 10.4 -- 0.966 -- -- -- 0.0513 19.3 -- -- -- --
39.33 0.292 10.4 -- -- -1.41 -- -- 0.0568 -- 2.526e-09 898 -- --
92.04 0.448 10.4 -- -- -- -- -- 0.0367 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.01 wind 1 14400 < th dose independent rect. 22 4
2 25.06 temperature 20 1440 < th dose independent rect. 4 2
3 25.08 temperature 20 1440 > th dose independent rect. 4 2
4 25.08 wind 1 14400 > th dose independent rect. 22 4
10 25.27 temperature 20 4320 < th dose independent rect. 22 1
16 25.33 temperature 20 4320 > th dose independent rect. 22 1
19 25.36 radiation 40 4320 < th dose independent rect. 15 17
20 25.36 atmosphere 1005 10 < th dose dependent rect. 24 10
23 25.37 atmosphere 1005 270 < th dose dependent rect. 24 7
27 25.39 humidity 50 43200 < th dose dependent rect. 8 1
31 25.39 radiation 30 4320 > th dose dependent rect. 15 17
37 25.41 radiation 1 1440 < th dose independent rect. 11 1
38 25.41 wind 1 14400 > th dose independent rect. 19 10
39 25.41 radiation 1 1440 < th dose dependent rect. 11 1
45 25.44 radiation 20 1440 < th dose independent rect. 10 3
63 25.49 wind 1 14400 < th dose independent rect. 19 10
65 25.49 wind 1 14400 < th dose dependent rect. 19 12
78 25.52 wind 1 1440 > th dose independent rect. 23 1
84 25.52 radiation 10 4320 > th dose dependent rect. 15 17
100 25.55 radiation 10 1440 < th dose independent rect. 13 17
103 25.55 wind 1 14400 < th dose dependent rect. 17 14
125 25.59 radiation 10 1440 < th dose independent rect. 9 21
142 25.62 radiation 20 4320 < th dose independent sin 12 NA
156 25.63 wind 1 14400 > th dose independent rect. 19 14
171 25.65 radiation 10 1440 < th dose independent sin 18 NA
172 25.65 temperature 20 4320 < th dose independent rect. 1 1
185 25.66 temperature 20 4320 > th dose independent rect. 1 1
219 25.69 wind 1 14400 < th dose dependent sin 12 NA
234 25.71 radiation 10 1440 < th dose independent rect. 9 10
240 25.71 radiation 10 1440 < th dose independent rect. 9 15
247 25.71 wind 1 14400 < th dose dependent rect. 21 10
251 25.72 radiation 40 4320 < th dose independent rect. 15 6
262 25.73 temperature 20 4320 < th dose independent sin 13 NA
265 25.73 radiation 40 4320 < th dose independent rect. 15 4
281 25.74 temperature 20 4320 > th dose independent sin 13 NA
283 25.74 humidity 50 43200 < th dose independent rect. 8 1
294 25.74 radiation 40 4320 < th dose independent rect. 15 13
303 25.75 radiation 10 1440 < th dose independent rect. 13 6
309 25.75 radiation 10 1440 < th dose independent rect. 13 11
341 25.77 radiation 40 4320 < th dose independent rect. 15 2
358 25.78 atmosphere 1005 720 < th dose independent rect. 21 4
390 25.79 wind 1 14400 < th dose dependent rect. 21 8
394 25.80 radiation 10 1440 < th dose independent rect. 14 3
450 25.83 wind 1 14400 > th dose independent sin 12 NA
451 25.83 humidity 50 43200 > th dose independent rect. 8 1
452 25.83 atmosphere 1005 1440 > th dose independent rect. 22 1
453 25.83 atmosphere 1005 720 < th dose independent rect. 23 1
502 25.85 radiation 20 1440 < th dose dependent rect. 10 3
507 25.86 atmosphere 1005 1440 > th dose independent rect. 21 3
555 25.88 radiation 30 1440 < th dose dependent rect. 11 1
558 25.89 humidity 50 43200 < th dose independent rect. 5 4
573 25.89 wind 1 14400 < th dose dependent rect. 22 5
635 25.92 radiation 10 4320 > th dose dependent sin 12 NA
639 25.92 humidity 50 43200 < th dose dependent rect. 21 13
640 25.92 radiation 40 4320 < th dose dependent rect. 15 17
735 25.99 humidity 50 43200 > th dose independent rect. 22 11
744 25.99 atmosphere 1005 14400 > th dose dependent rect. 24 1
754 26.00 temperature 10 43200 > th dose independent rect. 9 6
771 26.01 wind 1 14400 < th dose independent sin 12 NA
773 26.01 atmosphere 1010 14400 < th dose independent rect. 9 1
774 26.01 humidity 50 43200 > th dose independent rect. 2 7
787 26.02 temperature 15 43200 > th dose independent rect. 22 1
803 26.02 wind 1 14400 < th dose dependent rect. 21 15
809 26.03 temperature 15 43200 < th dose independent rect. 22 2
822 26.03 temperature 20 4320 < th dose dependent rect. 18 1
833 26.04 radiation 10 1440 < th dose independent no NA NA
835 26.04 radiation 40 43200 > th dose independent rect. 7 1
865 26.04 radiation 10 1440 < th dose independent rect. 4 15
918 26.04 temperature 15 43200 < th dose dependent rect. 1 1
919 26.04 radiation 40 43200 > th dose dependent rect. 7 1
939 26.05 atmosphere 1010 14400 > th dose independent rect. 9 1
978 26.05 radiation 10 1440 < th dose dependent rect. 7 9