Os01g0737300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0737300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.63 | 0.317 | 8.39 | 0.542 | 1.04 | 0.908 | 0.229 | -1.53 | -0.146 | 14.3 | 23.13 | 12 | -- | -- |
| 47.75 | 0.322 | 8.41 | 0.418 | 1.03 | 1.41 | 0.658 | -- | -0.181 | 14.2 | 21.19 | 22 | -- | -- |
| 45.77 | 0.315 | 8.39 | 0.571 | 1.03 | 0.879 | -- | -1.71 | -0.139 | 14.3 | 23.2 | 12 | -- | -- |
| 49.32 | 0.327 | 8.42 | 0.396 | 1.03 | 1.41 | -- | -- | -0.198 | 14.4 | 21.1 | 23 | -- | -- |
| 102.51 | 0.472 | 8.41 | 0.4 | -- | 0.42 | -- | -2.29 | -0.247 | -- | 20.8 | 290 | -- | -- |
| 64.07 | 0.375 | 8.45 | 0.138 | 0.902 | -- | 0.716 | -- | -0.326 | 14.4 | -- | -- | -- | -- |
| 65.84 | 0.38 | 8.44 | 0.158 | 0.909 | -- | -- | -- | -0.321 | 14.5 | -- | -- | -- | -- |
| 97.82 | 0.461 | 8.42 | 0.473 | -- | 1.48 | -- | -- | -0.192 | -- | 20.64 | 1172 | -- | -- |
| 53.31 | 0.34 | 8.42 | -- | 1.01 | 1.34 | -- | -- | -0.246 | 14.3 | 21.1 | 22 | -- | -- |
| 114.33 | 0.5 | 8.45 | 0.12 | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
| 66.5 | 0.381 | 8.45 | -- | 0.906 | -- | -- | -- | -0.338 | 14.5 | -- | -- | -- | -- |
| 102.29 | 0.471 | 8.42 | -- | -- | 0.828 | -- | -- | -0.197 | -- | 26.7 | 1023 | -- | -- |
| 114.71 | 0.5 | 8.45 | -- | -- | -- | -- | -- | -0.357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.48 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 23 |
| 4 | 46.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 7 | 46.94 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 9 | 46.96 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 22 |
| 13 | 47.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 14 | 47.11 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 17 | 47.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 21 | 47.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 22 | 47.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 24 | 47.26 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 28 | 47.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 29 | 47.30 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 31 | 47.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 47.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 36 | 47.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 40 | 47.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 41 | 47.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 46 | 47.39 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 23 |
| 55 | 47.44 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 22 |
| 66 | 47.51 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 23 |
| 71 | 47.56 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 94 | 47.61 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 95 | 47.61 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 100 | 47.62 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 105 | 47.63 | temperature | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 109 | 47.64 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 23 |
| 111 | 47.64 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 133 | 47.75 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 135 | 47.76 | temperature | 20 | 30 | > th | dose independent | sin | 8 | NA |
| 138 | 47.78 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 146 | 47.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 170 | 47.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 239 | 48.13 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 21 |
| 263 | 48.18 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 20 |
| 339 | 48.42 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 18 |
| 432 | 48.64 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 17 |
| 450 | 48.70 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 505 | 48.81 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 19 |
| 531 | 48.86 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 15 |
| 539 | 48.89 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 17 |
| 548 | 48.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 592 | 48.99 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 625 | 49.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 724 | 49.21 | temperature | 25 | 270 | < th | dose dependent | sin | 18 | NA |
| 752 | 49.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 5 |
| 784 | 49.30 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 834 | 49.37 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 12 |
| 879 | 49.43 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |