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Os01g0736000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HMG-I and HMG-Y, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.11 (0.0275) R2 : 0.686
β1 : 3.06 (0.105) R2dD : 0.657 R2D : 0.342
β2 : 0.565 (0.0654) R2dC : 0.0524 R2C : 0.0267
β3 : -1.41 (0.0833) R2dE : 0.219 R2E : -0.0409
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.64 (0.059) R2dN8 : 0.108 R2N8 : -0.0268
σ : 0.512
deviance : 120.68
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_____
C
peak time of C : 22.8
E
wheather : temperature
threshold : 25.58
memory length : 5733
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.91 0.508 9.04 3.57 0.612 -1.48 0.94 2.09 0.71 22.9 26.11 1429 -- --
118.86 0.508 9.12 3.02 0.59 -1.28 0.83 -- 0.599 23.5 25.87 1391 -- --
120.57 0.511 9.04 3.56 0.608 -1.48 -- 2.2 0.703 23 26.11 1432 -- --
120.68 0.512 9.11 3.06 0.565 -1.41 -- -- 0.64 22.8 25.58 5733 -- --
142.02 0.555 9.02 3.57 -- -1.5 -- 2.28 0.751 -- 25.7 1510 -- --
192.69 0.651 9.13 2.55 0.532 -- 0.91 -- 0.503 22.2 -- -- -- --
195.91 0.655 9.13 2.51 0.526 -- -- -- 0.5 22.5 -- -- -- --
139.06 0.549 9.08 3.02 -- -1.37 -- -- 0.641 -- 25.98 5883 -- --
336.66 0.855 9.15 -- 0.558 -0.747 -- -- 0.318 22.8 28.4 7349 -- --
212.9 0.682 9.11 2.52 -- -- -- -- 0.502 -- -- -- -- --
361.8 0.89 9.19 -- 0.544 -- -- -- 0.22 22.8 -- -- -- --
354.61 0.877 9.16 -- -- -0.714 -- -- 0.318 -- 29.24 7342 -- --
380.15 0.91 9.18 -- -- -- -- -- 0.223 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.30 humidity 70.0 14400 < th dose independent rect. 19 1
2 100.31 humidity 70.0 14400 > th dose independent rect. 19 12
3 100.34 humidity 70.0 14400 > th dose independent rect. 19 2
6 100.54 humidity 70.0 14400 > th dose independent rect. 19 5
14 100.93 humidity 70.0 14400 < th dose independent rect. 19 12
36 104.51 radiation 20.0 14400 > th dose dependent rect. 16 15
39 105.92 radiation 20.0 14400 < th dose independent rect. 16 15
40 106.11 radiation 20.0 14400 > th dose dependent rect. 16 1
66 106.53 radiation 30.0 14400 < th dose independent rect. 15 17
82 107.51 radiation 20.0 14400 < th dose independent rect. 16 4
83 107.52 radiation 20.0 14400 < th dose independent rect. 16 8
108 108.25 radiation 10.0 14400 < th dose independent rect. 14 16
113 108.74 humidity 70.0 14400 < th dose dependent rect. 18 1
117 108.95 radiation 30.0 14400 > th dose dependent rect. 15 17
135 109.62 radiation 10.0 14400 < th dose independent rect. 14 11
138 109.63 radiation 10.0 14400 < th dose independent rect. 14 5
146 109.70 wind 5.0 43200 < th dose independent rect. 5 9
149 109.89 wind 5.0 43200 > th dose independent rect. 5 9
178 110.30 humidity 90.0 43200 > th dose dependent rect. 21 1
179 110.34 radiation 10.0 14400 < th dose independent sin 14 NA
180 110.34 wind 5.0 43200 < th dose independent rect. 9 3
184 110.41 wind 5.0 43200 > th dose independent rect. 9 3
190 110.61 humidity 70.0 14400 < th dose dependent rect. 18 13
199 110.97 wind 5.0 43200 < th dose independent rect. 5 2
200 110.98 humidity 70.0 14400 < th dose dependent rect. 18 4
229 111.21 humidity 90.0 43200 < th dose independent rect. 20 1
231 111.24 radiation 40.0 14400 < th dose dependent rect. 18 2
234 111.30 wind 3.0 43200 < th dose dependent rect. 2 2
239 111.34 humidity 90.0 43200 > th dose independent rect. 9 1
254 111.39 radiation 40.0 14400 < th dose dependent rect. 18 7
260 111.44 radiation 30.0 14400 > th dose independent rect. 7 1
290 111.59 radiation 20.0 14400 < th dose dependent rect. 18 4
296 111.63 wind 5.0 43200 < th dose independent sin 4 NA
313 111.76 precipitation 0.1 43200 > th dose independent rect. 15 4
314 111.77 wind 3.0 43200 > th dose dependent rect. 5 8
315 111.78 precipitation 0.1 43200 < th dose independent rect. 15 4
316 111.78 precipitation 0.1 43200 < th dose dependent rect. 15 4
332 111.85 temperature 25.0 14400 > th dose dependent rect. 17 6
341 111.96 wind 5.0 43200 > th dose independent sin 4 NA
342 111.96 wind 5.0 43200 > th dose independent rect. 5 2
350 112.04 wind 3.0 43200 > th dose dependent rect. 3 11
381 112.16 radiation 20.0 14400 < th dose dependent rect. 17 12
429 112.41 humidity 90.0 43200 > th dose dependent rect. 9 1
470 112.51 wind 5.0 43200 < th dose independent rect. 24 15
480 112.53 humidity 90.0 43200 > th dose independent rect. 21 1
538 112.76 wind 3.0 43200 > th dose dependent rect. 24 14
552 112.83 wind 5.0 43200 > th dose independent rect. 24 15
570 112.90 radiation 40.0 4320 > th dose dependent rect. 13 20
588 112.96 radiation 1.0 14400 > th dose independent rect. 17 2
598 112.97 wind 3.0 43200 > th dose independent rect. 3 1
629 113.15 wind 3.0 43200 < th dose independent rect. 3 1
631 113.16 temperature 25.0 14400 > th dose dependent sin 13 NA
644 113.22 radiation 30.0 14400 < th dose independent sin 12 NA
681 113.35 wind 3.0 43200 > th dose dependent rect. 5 1
727 113.52 radiation 40.0 4320 > th dose dependent rect. 13 2
730 113.54 wind 1.0 43200 > th dose dependent rect. 3 1
737 113.54 precipitation 0.1 43200 > th dose dependent rect. 14 8
752 113.60 precipitation 0.1 43200 > th dose dependent rect. 11 8
767 113.70 temperature 30.0 14400 < th dose independent rect. 15 17
768 113.71 humidity 90.0 43200 < th dose independent rect. 9 2
769 113.71 temperature 30.0 14400 < th dose independent rect. 15 4
776 113.71 temperature 30.0 14400 < th dose independent rect. 15 12
787 113.76 precipitation 0.1 43200 > th dose dependent rect. 14 5
792 113.78 wind 3.0 43200 > th dose dependent rect. 9 3
798 113.81 temperature 30.0 14400 > th dose independent rect. 15 4
818 113.83 temperature 30.0 14400 < th dose independent rect. 16 1
825 113.88 temperature 30.0 14400 > th dose independent rect. 16 1
840 113.93 temperature 25.0 14400 > th dose independent rect. 19 2
843 113.94 wind 3.0 43200 > th dose dependent sin 5 NA
860 114.04 precipitation 0.1 43200 > th dose dependent rect. 19 2
869 114.07 wind 5.0 43200 < th dose independent rect. 20 19
870 114.08 precipitation 0.1 43200 > th dose independent rect. 15 7
872 114.09 precipitation 0.1 43200 < th dose independent rect. 15 7
874 114.09 precipitation 0.1 43200 < th dose dependent rect. 15 7
886 114.15 precipitation 0.1 43200 > th dose dependent rect. 11 11
912 114.17 precipitation 0.1 43200 > th dose independent rect. 11 8
936 114.20 wind 5.0 43200 > th dose independent rect. 20 19
937 114.21 temperature 30.0 14400 < th dose independent sin 13 NA
944 114.23 precipitation 0.1 43200 < th dose independent rect. 11 8
945 114.23 precipitation 0.1 43200 < th dose dependent rect. 11 8
958 114.27 temperature 30.0 14400 > th dose independent sin 13 NA