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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0730700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 14 (WRKY14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0422) R2 : 0.421
β1 : 2.37 (0.164) R2dD : 0.313 R2D : 0.0694
β2 : 0.615 (0.109) R2dC : 0.0424 R2C : 0.0318
β3 : -1.93 (0.144) R2dE : 0.27 R2E : 0.0518
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.588 (0.0924) R2dN8 : 0.0734 R2N8 : -0.0392
σ : 0.784
deviance : 283.55
__
_____
C
peak time of C : 17
E
wheather : temperature
threshold : 26.87
memory length : 5416
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.73 0.77 3.98 2.87 0.561 -2.18 2.74 1.45 0.796 18.8 26.27 5381 -- --
270.09 0.765 4.03 2.47 0.555 -2.06 2.6 -- 0.689 18.7 26.25 5376 -- --
283.08 0.784 3.97 2.79 0.653 -2.13 -- 1.58 0.758 17.1 26.51 5387 -- --
283.55 0.784 4.05 2.37 0.615 -1.93 -- -- 0.588 17 26.87 5416 -- --
301.89 0.809 3.97 2.81 -- -2.1 -- 1.61 0.721 -- 26.82 5515 -- --
386.1 0.921 4.13 1.62 0.622 -- 2.5 -- 0.272 17.9 -- -- -- --
394.8 0.93 4.11 1.61 0.713 -- -- -- 0.286 16.1 -- -- -- --
302.03 0.809 4.03 2.36 -- -1.9 -- -- 0.617 -- 27.2 5582 -- --
405.39 0.938 4.14 -- 0.611 -1.22 -- -- 0.212 17.3 28.4 5512 -- --
422.37 0.96 4.11 1.58 -- -- -- -- 0.267 -- -- -- -- --
463.44 1.01 4.16 -- 0.682 -- -- -- 0.107 16.2 -- -- -- --
421.92 0.957 4.13 -- -- -1.2 -- -- 0.192 -- 28.8 5534 -- --
488.63 1.03 4.15 -- -- -- -- -- 0.0916 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.12 humidity 90 43200 > th dose independent rect. 9 1
3 251.02 humidity 90 43200 > th dose dependent rect. 9 1
4 251.86 humidity 90 43200 > th dose dependent rect. 20 2
5 252.11 humidity 90 43200 < th dose independent rect. 1 22
6 252.12 humidity 90 43200 < th dose independent rect. 20 2
7 252.38 humidity 90 43200 > th dose independent rect. 21 1
11 252.57 humidity 90 43200 < th dose independent rect. 9 2
18 252.70 humidity 90 43200 < th dose independent rect. 7 22
19 252.70 humidity 90 43200 > th dose dependent rect. 18 4
31 253.05 humidity 80 43200 > th dose dependent rect. 9 4
37 253.19 temperature 20 43200 > th dose independent rect. 19 1
38 253.20 humidity 90 43200 < th dose independent rect. 17 5
46 253.32 humidity 90 43200 < th dose independent rect. 11 23
47 253.35 humidity 90 43200 < th dose independent rect. 15 23
48 253.37 humidity 90 43200 < th dose independent rect. 13 23
49 253.38 humidity 90 43200 < th dose independent no NA NA
50 253.38 humidity 90 43200 < th dose independent rect. 17 23
54 253.45 humidity 90 43200 < th dose independent rect. 19 23
60 253.52 humidity 90 43200 < th dose independent rect. 14 9
96 253.76 humidity 90 43200 < th dose independent sin 17 NA
107 253.87 humidity 90 43200 > th dose independent rect. 17 5
110 253.92 humidity 90 43200 > th dose independent rect. 2 21
111 253.93 humidity 80 43200 > th dose independent rect. 12 3
134 254.10 humidity 80 43200 < th dose independent rect. 13 1
140 254.15 humidity 90 43200 > th dose independent rect. 15 8
164 254.33 humidity 90 43200 > th dose independent rect. 8 15
167 254.34 humidity 90 43200 < th dose independent rect. 8 15
213 254.70 humidity 90 43200 > th dose independent rect. 7 20
251 254.99 humidity 90 43200 < th dose independent sin 4 NA
256 255.00 humidity 80 43200 > th dose dependent rect. 9 10
257 255.00 humidity 90 43200 > th dose dependent rect. 8 15
271 255.09 humidity 90 43200 > th dose independent rect. 6 23
272 255.10 humidity 90 43200 > th dose independent sin 18 NA
288 255.17 temperature 20 43200 < th dose independent rect. 19 1
296 255.19 humidity 90 43200 > th dose independent rect. 4 23
306 255.24 humidity 90 43200 < th dose independent rect. 1 13
333 255.40 humidity 90 43200 > th dose independent rect. 11 23
347 255.49 humidity 90 43200 > th dose independent no NA NA
357 255.54 humidity 90 43200 > th dose independent rect. 15 23
358 255.55 humidity 90 43200 > th dose independent rect. 17 23
359 255.55 humidity 90 43200 > th dose independent rect. 20 23
384 255.67 humidity 80 43200 > th dose dependent sin 19 NA
432 255.86 humidity 80 43200 > th dose dependent rect. 17 1
435 255.87 humidity 90 43200 < th dose independent rect. 2 10
511 256.26 humidity 80 43200 > th dose dependent rect. 2 20
521 256.34 humidity 90 43200 > th dose independent sin 4 NA
638 256.80 humidity 90 43200 < th dose independent rect. 3 8
798 257.74 humidity 90 43200 > th dose independent rect. 18 1
810 257.81 humidity 90 43200 > th dose independent rect. 3 7
855 258.04 temperature 25 43200 < th dose dependent rect. 14 3
861 258.07 wind 5 43200 > th dose independent rect. 11 1
911 258.33 temperature 25 14400 > th dose dependent rect. 24 15
938 258.43 temperature 25 14400 > th dose dependent rect. 5 10
984 258.65 humidity 80 43200 > th dose dependent rect. 14 5
986 258.66 temperature 20 43200 > th dose independent rect. 12 10