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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0730600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.07 (0.0381) R2 : 0.441
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.7 (0.0943) R2dC : 0.397 R2C : 0.392
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.444 (0.0803) R2dN8 : 0.0486 R2N8 : 0.0435
σ : 0.719
deviance : 236.44
__
_____
C
peak time of C : 14.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.07 0.678 4.04 1.08 1.65 -1.41 1.04 1.92 -0.497 14.8 50 4396 -- --
210.54 0.676 4.08 0.924 1.69 -1.16 1.09 -- -0.454 14.8 49.21 4572 -- --
211.67 0.678 4.04 1.09 1.65 -1.45 -- 1.88 -0.488 14.7 49.99 4409 -- --
213.95 0.681 4.08 0.946 1.68 -0.882 -- -- -0.456 14.7 49.58 4433 -- --
364.12 0.889 4.01 1.28 -- -2.29 -- 3.59 -0.59 -- 49.01 4203 -- --
222.27 0.699 4.06 0.59 1.71 -- 1.1 -- -0.382 14.7 -- -- -- --
226.42 0.705 4.06 0.617 1.71 -- -- -- -0.376 14.7 -- -- -- --
373.49 0.9 4.12 0.913 -- -0.978 -- -- -0.585 -- 52 4124 -- --
225.65 0.7 4.09 -- 1.72 -0.84 -- -- -0.52 14.8 61 6351 -- --
396.49 0.93 4.07 0.544 -- -- -- -- -0.419 -- -- -- -- --
236.44 0.719 4.07 -- 1.7 -- -- -- -0.444 14.7 -- -- -- --
372.56 0.902 4.05 -- -- 0.838 -- -- -0.351 -- 63.84 8329 -- --
404.29 0.939 4.08 -- -- -- -- -- -0.479 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.42 temperature 25.0 270 > th dose independent rect. 15 7
6 204.32 temperature 20.0 270 > th dose dependent rect. 15 7
13 204.79 temperature 20.0 10 > th dose dependent rect. 16 9
20 205.19 wind 1.0 43200 < th dose dependent rect. 9 4
22 205.37 wind 1.0 43200 < th dose dependent rect. 2 1
33 205.57 wind 9.0 43200 > th dose dependent rect. 12 2
35 205.63 temperature 20.0 270 > th dose dependent rect. 15 17
40 205.72 temperature 10.0 270 > th dose dependent rect. 15 17
58 206.10 humidity 50.0 4320 < th dose independent rect. 15 1
62 206.18 temperature 20.0 1440 > th dose independent rect. 4 1
64 206.22 temperature 20.0 1440 < th dose independent rect. 4 1
66 206.25 wind 1.0 43200 > th dose independent rect. 2 1
67 206.25 temperature 25.0 10 > th dose independent rect. 16 12
70 206.28 temperature 25.0 10 > th dose independent rect. 16 9
83 206.46 humidity 80.0 14400 < th dose independent rect. 4 3
92 206.55 humidity 80.0 14400 > th dose independent rect. 3 4
102 206.63 wind 1.0 43200 < th dose independent rect. 8 5
104 206.65 wind 9.0 43200 > th dose independent rect. 13 1
112 206.76 humidity 80.0 14400 > th dose independent rect. 5 1
118 206.80 wind 1.0 43200 < th dose independent rect. 2 1
120 206.81 humidity 50.0 30 > th dose independent rect. 23 17
122 206.82 atmosphere 1000.0 90 > th dose independent rect. 4 18
134 206.91 atmosphere 1000.0 90 > th dose independent rect. 15 8
142 206.96 humidity 80.0 14400 < th dose dependent rect. 2 5
145 206.98 humidity 80.0 14400 > th dose independent rect. 2 1
147 207.00 humidity 80.0 14400 < th dose dependent rect. 4 3
151 207.01 humidity 80.0 14400 < th dose dependent rect. 2 1
156 207.03 wind 7.0 270 < th dose independent rect. 14 7
157 207.05 wind 9.0 43200 < th dose independent rect. 13 1
186 207.17 humidity 80.0 14400 < th dose dependent rect. 5 1
191 207.21 temperature 30.0 43200 > th dose dependent rect. 8 1
221 207.32 wind 1.0 43200 > th dose independent rect. 8 5
224 207.32 wind 3.0 14400 < th dose dependent rect. 12 1
245 207.47 wind 1.0 14400 > th dose independent rect. 8 2
247 207.47 atmosphere 1000.0 10 > th dose independent rect. 16 7
253 207.50 humidity 50.0 4320 < th dose independent rect. 13 4
259 207.52 atmosphere 1010.0 270 < th dose independent rect. 14 8
260 207.52 wind 7.0 270 < th dose independent rect. 21 17
263 207.53 temperature 25.0 30 > th dose independent rect. 16 14
309 207.72 humidity 50.0 270 > th dose independent rect. 21 18
336 207.84 temperature 30.0 43200 > th dose independent rect. 8 1
362 207.88 wind 7.0 30 < th dose independent rect. 16 7
449 208.12 wind 1.0 90 > th dose independent rect. 16 7
462 208.19 precipitation 0.1 90 < th dose independent rect. 16 7
463 208.19 precipitation 0.1 90 < th dose dependent rect. 16 7
466 208.21 wind 9.0 270 < th dose dependent rect. 14 7
470 208.24 humidity 50.0 4320 < th dose independent sin 19 NA
480 208.27 temperature 30.0 43200 < th dose independent rect. 5 4
483 208.27 wind 1.0 43200 < th dose dependent rect. 5 21
506 208.31 temperature 30.0 43200 < th dose independent rect. 2 7
510 208.32 radiation 30.0 43200 > th dose independent rect. 11 1
519 208.34 temperature 30.0 43200 < th dose independent rect. 19 14
521 208.35 temperature 30.0 43200 < th dose independent rect. 8 1
523 208.35 wind 5.0 14400 > th dose independent rect. 22 4
530 208.37 temperature 25.0 30 > th dose independent rect. 16 16
537 208.41 wind 9.0 30 < th dose independent rect. 23 17
563 208.45 humidity 50.0 4320 < th dose independent no NA NA
686 208.46 temperature 25.0 270 > th dose dependent sin 13 NA
689 208.48 radiation 20.0 10 < th dose independent rect. 16 7
695 208.51 temperature 25.0 720 > th dose dependent rect. 12 10
700 208.54 radiation 30.0 90 < th dose independent rect. 15 8
713 208.60 wind 9.0 43200 > th dose dependent rect. 15 1
742 208.65 precipitation 0.1 270 < th dose independent rect. 14 7
743 208.65 precipitation 0.1 270 < th dose dependent rect. 14 7
753 208.68 temperature 10.0 10 > th dose independent rect. 16 7
757 208.68 atmosphere 1010.0 10 < th dose independent rect. 16 7
761 208.68 radiation 40.0 10 < th dose independent rect. 16 7
763 208.68 temperature 10.0 10 > th dose independent rect. 23 17
779 208.73 humidity 50.0 270 > th dose independent rect. 8 8
783 208.75 humidity 60.0 4320 < th dose independent rect. 16 4
802 208.77 wind 1.0 43200 < th dose independent rect. 11 1
806 208.78 wind 5.0 14400 < th dose independent rect. 22 4
810 208.78 radiation 1.0 270 > th dose dependent rect. 16 2
813 208.79 humidity 50.0 4320 < th dose dependent sin 11 NA
827 208.83 temperature 25.0 720 > th dose dependent sin 17 NA
842 208.88 wind 5.0 14400 > th dose independent rect. 23 1
845 208.90 humidity 60.0 4320 > th dose independent rect. 16 13
858 208.93 humidity 60.0 4320 > th dose independent rect. 16 3
864 208.93 humidity 60.0 4320 > th dose independent rect. 16 9
873 208.95 temperature 15.0 270 > th dose independent rect. 14 7
875 208.95 wind 5.0 4320 > th dose dependent rect. 22 3
882 208.96 radiation 40.0 10 < th dose dependent rect. 16 7
892 208.98 atmosphere 1000.0 270 > th dose independent rect. 14 19
916 209.03 wind 3.0 14400 > th dose independent rect. 12 1
917 209.03 wind 1.0 270 > th dose independent rect. 14 7
921 209.04 atmosphere 995.0 10 > th dose dependent rect. 16 7
936 209.09 atmosphere 1000.0 270 > th dose independent rect. 15 17
950 209.13 temperature 10.0 270 > th dose independent rect. 21 17
952 209.13 atmosphere 995.0 270 > th dose independent rect. 21 17
956 209.14 wind 7.0 270 < th dose independent rect. 8 7
965 209.15 wind 1.0 43200 < th dose dependent rect. 8 18
967 209.16 radiation 1.0 270 > th dose independent rect. 16 3
980 209.17 wind 7.0 270 < th dose independent rect. 15 17
981 209.17 wind 5.0 4320 > th dose dependent rect. 23 1
991 209.19 wind 1.0 43200 < th dose dependent rect. 23 3
992 209.19 humidity 50.0 4320 < th dose dependent rect. 14 3